Jatropha Genome Database

JcCA0021071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0021071.10 - phase: 0 /pseudo
         (1548 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas emb...   309   5e-84

>gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004251,
           mRNA sequence
          Length = 525

 Score =  309 bits (156), Expect = 5e-84
 Identities = 384/461 (83%), Gaps = 1/461 (0%)
 Strand = Plus / Plus

                                                                       
Query: 415 ctttttagtgctaaaagagttcaatcatttcaatcca-ttagagaagaagaagtgggttt 473
           ||||||||||||||||||| |||||| |||||||||  |||||||||||||||||||| |
Sbjct: 1   ctttttagtgctaaaagagctcaatcgtttcaatcctgttagagaagaagaagtgggtct 60

                                                                       
Query: 474 gttaatcgattcgattttaaaatcttcttcctcttcttttccggtggatctcagtgaaaa 533
            || || ||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 61  tttcatagattcgattttaaaatcttcttcttcttcttctcctgtggatcttagtgaaaa 120

                                                                       
Query: 534 gactatgtctcttactgcaaatgttatttgtagagtagcttttgggaaaagttttcaaga 593
            | ||||||||||||||||||||||| ||||||||||||||||||||| ||||||  |  
Sbjct: 121 aattatgtctcttactgcaaatgttacttgtagagtagcttttgggaatagttttgcaac 180

                                                                       
Query: 594 aagaggatttaaacatgaaaggtttcaagaagttgttcgtgaagggttcgctatgttggg 653
           |||||||||||  || |||||||||||||||||  ||| |||||  || || | ||| ||
Sbjct: 181 aagaggatttacccaggaaaggtttcaagaagtgattcatgaagctttagccaagttagg 240

                                                                       
Query: 654 gagttttactgcagctgannnnnnncctcacgttggatgggttgttgataggcttacagg 713
           | ||||| ||||| ||||       ||| | || || ||| ||||||||||| |||||||
Sbjct: 241 gggtttttctgcatctgacttttttccttatgtgggttggattgttgatagggttacagg 300

                                                                       
Query: 714 cctccatgcaagatctgatagagtctttaaagaatttgatgagttctaccagaagattat 773
            |||||| ||| |   || |||  |||| ||||| ||||||| ||| |||||||||||||
Sbjct: 301 tctccattcaaaactggaaagaagctttcaagaacttgatgaattccaccagaagattat 360

                                                                       
Query: 774 tgatgatcatatccaaaagggaaaagaagatcctggacatgaagatataattgatgtttt 833
           ||| |||||||||||||| ||||||||  | | ||||||| |||||||  | ||||| | 
Sbjct: 361 tgaggatcatatccaaaacggaaaagagaagcatggacatcaagatattgtcgatgtata 420

                                                    
Query: 834 gttggatttggagaggtatcaaactgaatctggtggaattc 874
           || |||||||||||| ||||||||||||||||  |||||||
Sbjct: 421 gtcggatttggagagatatcaaactgaatctgaaggaattc 461