Jatropha Genome Database

JcCA0020851.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0020851.20 - phase: 0 
         (501 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262091093|gb|GT228520.1|GT228520 JC085 Jatropha seeds from fr...    48   1e-05
gi|268525134|gb|FM895776.1|FM895776 FM895776 Jatropha curcas emb...    48   1e-05

>gi|262091093|gb|GT228520.1|GT228520 JC085 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone Contig87 5', mRNA sequence
          Length = 624

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 416 catctccattgactagtgtcaacacaagatttagccaaatttccagtattattttaacat 475
           ||||||||||||||| | ||||||||  ||||| |||| |||   |||| || |||| ||
Sbjct: 445 catctccattgactactttcaacacacaatttaaccaagtttgtggtatcatattaaaat 504

                       
Query: 476 tttccaatctct 487
           ||||||||||||
Sbjct: 505 tttccaatctct 516


>gi|268525134|gb|FM895776.1|FM895776 FM895776 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002758,
           mRNA sequence
          Length = 599

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 416 catctccattgactagtgtcaacacaagatttagccaaatttccagtattattttaacat 475
           ||||||||||||||| | ||||||||  ||||| |||| |||   |||| || |||| ||
Sbjct: 463 catctccattgactactttcaacacacaatttaaccaagtttgtggtatcatattaaaat 522

                       
Query: 476 tttccaatctct 487
           ||||||||||||
Sbjct: 523 tttccaatctct 534