Jatropha Genome Database
- JcCA0020841.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0020841.30 + phase: 1 /partial
(935 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268524654|gb|FM895352.1|FM895352 FM895352 Jatropha curcas emb... 232 6e-61
gi|268521592|gb|FM896800.1|FM896800 FM896800 Jatropha curcas emb... 220 2e-57
gi|268521598|gb|FM896806.1|FM896806 FM896806 Jatropha curcas emb... 184 1e-46
gi|268523944|gb|FM890630.1|FM890630 FM890630 Jatropha curcas emb... 98 2e-20
gi|268519557|gb|FM888024.1|FM888024 FM888024 Jatropha curcas emb... 80 5e-15
gi|238476714|gb|GR209252.1|GR209252 JCST31 Jatropha curcas L. se... 78 2e-14
gi|268521122|gb|FM891841.1|FM891841 FM891841 Jatropha curcas emb... 72 1e-12
gi|262091134|gb|GT228561.1|GT228561 JC126 Jatropha seeds from fr... 70 5e-12
gi|268519020|gb|FM887487.1|FM887487 FM887487 Jatropha curcas emb... 68 2e-11
gi|268519346|gb|FM887813.1|FM887813 FM887813 Jatropha curcas emb... 62 1e-09
gi|262090897|gb|GT229255.1|GT229255 JC820 Jatropha seeds from fr... 56 7e-08
gi|268517374|gb|FM887316.1|FM887316 FM887316 Jatropha curcas emb... 54 3e-07
>gi|268524654|gb|FM895352.1|FM895352 FM895352 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002160,
mRNA sequence
Length = 601
Score = 232 bits (117), Expect = 6e-61
Identities = 315/381 (82%)
Strand = Plus / Minus
Query: 477 cagcaaatgtgggatgctaagaacatgatgtgtgcagctgatccgcgacatggaaggtac 536
||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||
Sbjct: 585 cagcaaatgtgggatgccaagaacatgatgtgtgcagctgatccaaggcatggtcggtac 526
Query: 537 ttgactgcttcagctttgtttaggggcaaaatgagcaccaaagaagttgatgagcaaatg 596
| ||||| || || |||| | || || ||||||||||| ||||| |||||||| |||
Sbjct: 525 ctcactgcctctgccatgttccgcggaaagatgagcaccaaggaagtggatgagcagatg 466
Query: 597 ataaatgtacaaaataagaactcatcttattttgttgagtggatacctaacaatgtgaag 656
|| ||||| ||||| ||||||||||| || |||||||||||||| || |||||||||||
Sbjct: 465 atcaatgtccaaaacaagaactcatcatactttgttgagtggattcccaacaatgtgaaa 406
Query: 657 tcaagtgtatgtgatattccaccaactgggttggcaatgtcatcaacatttatgggaaat 716
|| ||||| ||||| |||||||| | ||| || ||||| |||| || || || ||||||
Sbjct: 405 tctagtgtttgtgacattccacctagggggctgtcaatggcatccaccttcattggaaat 346
Query: 717 tccacttccattcaggaaatgtttaggcgtgtatcagagcaatttactgttatgttcagg 776
|| || ||||| || |||||||| ||||| || |||||||| |||| |||||||||
Sbjct: 345 tcaacctccatccaagaaatgttcaggcgagtgagtgagcaattcactgccatgttcagg 286
Query: 777 agaaaggcgtttttgcattggtatacaggggagggaatggatgagatggaatttactgag 836
|| ||||| |||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 285 aggaaggcctttttgcactggtatactggtgaaggaatggatgagatggagtttacagaa 226
Query: 837 gcagagagtaatatgaatgat 857
|| || || ||||||||||||
Sbjct: 225 gctgaaagcaatatgaatgat 205
>gi|268521592|gb|FM896800.1|FM896800 FM896800 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004204,
mRNA sequence
Length = 580
Score = 220 bits (111), Expect = 2e-57
Identities = 219/255 (85%)
Strand = Plus / Plus
Query: 24 ggaggtggcactggttcaggaatgggaactctgcttatatcaaagataagggaagaatac 83
|||||||| ||||| || ||||||||||| || | || || || || ||||||||||||
Sbjct: 221 ggaggtggtactggatctggaatgggaacgctattgatctctaaaattagggaagaatac 280
Query: 84 ccagatagaatgatgttaactttctcagtttttccctctcctaaggtctctgatacagtt 143
|||||||| |||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 281 ccagataggatgatgttgactttctctgtatttccttctcctaaggtctctgatacagtt 340
Query: 144 gttgagccttacaatgccactctctctgtgcaccaacttgttgaaaatgctgatgagtgt 203
|| |||||||| ||||||||||| ||||| || || || || |||||||| |||||||||
Sbjct: 341 gtggagccttataatgccactctttctgtccatcagctagtggaaaatgcagatgagtgt 400
Query: 204 atggtacttgacaatgaagcactttatgatatctgcttcagaactctcaagctcaccaat 263
||||| |||||||| ||||| | || ||||| ||||||||||| ||||| |||||||
Sbjct: 401 atggttcttgacaacgaagccttgtacgatatttgcttcagaacgctcaaactcaccacc 460
Query: 264 ccaagctttggtgat 278
|||||||||||||||
Sbjct: 461 ccaagctttggtgat 475
>gi|268521598|gb|FM896806.1|FM896806 FM896806 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004210,
mRNA sequence
Length = 528
Score = 184 bits (93), Expect = 1e-46
Identities = 319/393 (81%), Gaps = 1/393 (0%)
Strand = Plus / Plus
Query: 498 aacatgatgtgtgcagctgatccgcgacatggaaggtacttgactgcttcagctttgttt 557
||||||||||||||||| |||||||| ||||| | ||||| ||||| || || ||||
Sbjct: 10 aacatgatgtgtgcagcagatccgcgccatggccgttacttaactgcctcggccatgttc 69
Query: 558 aggg-gcaaaatgagcaccaaagaagttgatgagcaaatgataaatgtacaaaataagaa 616
|||| | ||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 70 agggtggaaaatgagcactaaagaagttgatgagcaaatgatcaatgttcaaaacaagaa 129
Query: 617 ctcatcttattttgttgagtggatacctaacaatgtgaagtcaagtgtatgtgatattcc 676
|| || || ||||| || ||||| || || ||||| || |||| ||| |||||||| ||
Sbjct: 130 ttcttcctactttgtagaatggattccaaataatgtaaaatcaactgtttgtgatatccc 189
Query: 677 accaactgggttggcaatgtcatcaacatttatgggaaattccacttccattcaggaaat 736
||||| || ||| |||| |||| ||||| || || || || || || |||||||||||
Sbjct: 190 tccaacaggcttgaaaatggcatccacattcattgggaactcaacatcaattcaggaaat 249
Query: 737 gtttaggcgtgtatcagagcaatttactgttatgttcaggagaaaggcgtttttgcattg 796
|||| | ||||| ||||| || || | ||||||||||||||||| || || |||||
Sbjct: 250 gtttcgccgtgtgagcgagcagttcacagccatgttcaggagaaaggctttcttacattg 309
Query: 797 gtatacaggggagggaatggatgagatggaatttactgaggcagagagtaatatgaatga 856
||| || || || || |||||||||||||| || || ||||||||||| |||||||||||
Sbjct: 310 gtacactggagaaggtatggatgagatggagttcacggaggcagagagcaatatgaatga 369
Query: 857 tttggtatcagaatatcaacaatatcaagatgc 889
|||||| || || ||||| || || ||||||||
Sbjct: 370 tttggtttccgagtatcagcagtaccaagatgc 402
>gi|268523944|gb|FM890630.1|FM890630 FM890630 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000534,
mRNA sequence
Length = 545
Score = 97.6 bits (49), Expect = 2e-20
Identities = 214/269 (79%)
Strand = Plus / Minus
Query: 621 tcttattttgttgagtggatacctaacaatgtgaagtcaagtgtatgtgatattccacca 680
||||||||||| |||||||| ||||||||||||||||| || || || |||||||| |||
Sbjct: 521 tcttattttgtggagtggattcctaacaatgtgaagtccagcgtgtgcgatattcctcca 462
Query: 681 actgggttggcaatgtcatcaacatttatgggaaattccacttccattcaggaaatgttt 740
| || ||| ||| ||||||| || |||| || ||||| || || ||||| |||||
Sbjct: 461 aagggtttgaggatggcatcaaccttcgtggggaactccacatcaatccaggagatgttc 402
Query: 741 aggcgtgtatcagagcaatttactgttatgttcaggagaaaggcgtttttgcattggtat 800
||| | ||| |||||||| || | |||||| | | ||||| || ||||| ||||||
Sbjct: 401 aggagggtaagtgagcaattcacagccatgttccgtcgcaaggccttcttgcactggtat 342
Query: 801 acaggggagggaatggatgagatggaatttactgaggcagagagtaatatgaatgatttg 860
|| ||||| || ||||| || |||||||| ||||| |||||||| || ||||||||||||
Sbjct: 341 actggggaagggatggacgaaatggaattcactgaagcagagagcaacatgaatgatttg 282
Query: 861 gtatcagaatatcaacaatatcaagatgc 889
|| |||| || |||||||| || |||||
Sbjct: 281 gtggcagagtaccaacaataccaggatgc 253
>gi|268519557|gb|FM888024.1|FM888024 FM888024 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001336,
mRNA sequence
Length = 609
Score = 79.8 bits (40), Expect = 5e-15
Identities = 124/152 (81%)
Strand = Plus / Plus
Query: 24 ggaggtggcactggttcaggaatgggaactctgcttatatcaaagataagggaagaatac 83
||||| ||||| ||||| || ||||||||||| || || |||||||| || || |||||
Sbjct: 454 ggaggaggcacgggttccggcatgggaactcttctcatctcaaagatcagagaggaatat 513
Query: 84 ccagatagaatgatgttaactttctcagtttttccctctcctaaggtctctgatacagtt 143
||||| | |||||| | || ||||| ||||| || || || || ||||| || ||||||
Sbjct: 514 ccagaccggatgatgctcacattctctgttttcccttcaccaaaagtctcagacacagtt 573
Query: 144 gttgagccttacaatgccactctctctgtgca 175
|| ||||| ||||||||| |||||||||||||
Sbjct: 574 gtggagccatacaatgccgctctctctgtgca 605
>gi|238476714|gb|GR209252.1|GR209252 JCST31 Jatropha curcas L. seed
cDNA library Jatropha curcas cDNA 3' similar to Populus
trichocarpa tubulin, beta chain (TUB5), mRNA sequence
Length = 489
Score = 77.8 bits (39), Expect = 2e-14
Identities = 96/115 (83%)
Strand = Plus / Plus
Query: 775 ggagaaaggcgtttttgcattggtatacaggggagggaatggatgagatggaatttactg 834
|||||||||| |||| ||||||| || || || || |||||||||||||| || || |
Sbjct: 48 ggagaaaggctttttaccattggtccactggagaaggtatggatgagatggagttcacgg 107
Query: 835 aggcagagagtaatatgaatgatttggtatcagaatatcaacaatatcaagatgc 889
|||||||||| ||||||||||||||||| || || ||||| || || ||||||||
Sbjct: 108 aggcagagagcaatatgaatgatttggtttccgagtatcagcagtaccaagatgc 162
>gi|268521122|gb|FM891841.1|FM891841 FM891841 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002233,
mRNA sequence
Length = 215
Score = 71.9 bits (36), Expect = 1e-12
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 789 ttgcattggtatacaggggagggaatggatgagatggaatttactgaggcagagagtaat 848
||||| |||||||| ||||| || ||||| || |||||||| ||||| |||||||| ||
Sbjct: 120 ttgcactggtatactggggaagggatggacgaaatggaattcactgaagcagagagcaac 179
Query: 849 atgaatgatttggtatcagaatatcaacaata 880
|||||||||||||| |||| || ||||||||
Sbjct: 180 atgaatgatttggtggcagagtaccaacaata 211
>gi|262091134|gb|GT228561.1|GT228561 JC126 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone Contig128 5', mRNA sequence
Length = 477
Score = 69.9 bits (35), Expect = 5e-12
Identities = 101/123 (82%)
Strand = Plus / Plus
Query: 768 atgttcaggagaaaggcgtttttgcattggtatacaggggagggaatggatgagatggaa 827
||||| ||||||||||| || | |||||||||||| || || || |||||||| |||||
Sbjct: 29 atgtttaggagaaaggctttctcgcattggtataccggtgaagggatggatgaaatggag 88
Query: 828 tttactgaggcagagagtaatatgaatgatttggtatcagaatatcaacaatatcaagat 887
||||| ||||| || || || ||||||||| | || || |||||||| ||||| || |||
Sbjct: 89 tttaccgaggccgaaagcaacatgaatgatcttgtgtctgaatatcagcaataccaggat 148
Query: 888 gct 890
|||
Sbjct: 149 gct 151
>gi|268519020|gb|FM887487.1|FM887487 FM887487 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000701,
mRNA sequence
Length = 554
Score = 67.9 bits (34), Expect = 2e-11
Identities = 217/278 (78%)
Strand = Plus / Plus
Query: 594 atgataaatgtacaaaataagaactcatcttattttgttgagtggatacctaacaatgtg 653
||||| ||||| ||||| |||||||| || || |||||||| ||||| || ||||||||
Sbjct: 5 atgatcaatgtccaaaacaagaactcttcgtactttgttgaatggatccccaacaatgtc 64
Query: 654 aagtcaagtgtatgtgatattccaccaactgggttggcaatgtcatcaacatttatggga 713
||||| | ||| ||||| || || ||||| || ||| |||| | || || ||||| ||
Sbjct: 65 aagtccactgtctgtgacatccctccaacaggcttgaaaatggcttccacttttattggc 124
Query: 714 aattccacttccattcaggaaatgtttaggcgtgtatcagagcaatttactgttatgttc 773
|| ||||| || ||||| || ||||| || | || ||||| || |||| |||||||
Sbjct: 125 aactccacatcaattcaagagatgttcagaagggtgagtgagcagttcactgctatgttc 184
Query: 774 aggagaaaggcgtttttgcattggtatacaggggagggaatggatgagatggaatttact 833
| || || || || ||||||||||| || || || |||||||| || ||||| || ||
Sbjct: 185 cgcaggaaagctttcttgcattggtacactggagaaggaatggacgaaatggagttcaca 244
Query: 834 gaggcagagagtaatatgaatgatttggtatcagaata 871
||||| ||||| || |||||||||||||| ||||||||
Sbjct: 245 gaggctgagagcaacatgaatgatttggtgtcagaata 282
>gi|268519346|gb|FM887813.1|FM887813 FM887813 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001084,
mRNA sequence
Length = 413
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 789 ttgcattggtatacaggggagggaatggatgagatggaatttactgaggcagagagtaat 848
||||||||||| || || || |||||||| || ||||| || || ||||| ||||| ||
Sbjct: 40 ttgcattggtacactggagaaggaatggacgaaatggagttcacagaggctgagagcaac 99
Query: 849 atgaatgatttggtatcagaata 871
|||||||||||||| ||||||||
Sbjct: 100 atgaatgatttggtgtcagaata 122
>gi|262090897|gb|GT229255.1|GT229255 JC820 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL20SE.G10.scf 5', mRNA sequence
Length = 526
Score = 56.0 bits (28), Expect = 7e-08
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 789 ttgcattggtatacaggggagggaatggatgagatggaatttactgaggcagagagtaat 848
||||||||||| || || || |||||||| || ||||| || || ||| | ||||| ||
Sbjct: 367 ttgcattggtacactggagaaggaatggacgaaatggagttcacagagnctgagagcaac 308
Query: 849 atgaatgatttggtatcagaata 871
|||||||||||||| ||||||||
Sbjct: 307 atgaatgatttggtgtcagaata 285
>gi|268517374|gb|FM887316.1|FM887316 FM887316 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000487,
mRNA sequence
Length = 549
Score = 54.0 bits (27), Expect = 3e-07
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 24 ggaggtggcactggttcaggaatgggaactctgcttatatcaaagataagggaagaatac 83
|||||||| ||||| || ||||||||||| ||| | || || | || ||||||||||||
Sbjct: 475 ggaggtggtactggatctggaatgggaacgctgttgatctctatcattagggaagaatac 534
Query: 84 ccagatagaatgatg 98
|||||||| ||||||
Sbjct: 535 ccagataggatgatg 549