Jatropha Genome Database

JcCA0020841.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0020841.20 - phase: 0 /pseudo/partial
         (249 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268521592|gb|FM896800.1|FM896800 FM896800 Jatropha curcas emb...    94   9e-20
gi|268517374|gb|FM887316.1|FM887316 FM887316 Jatropha curcas emb...    92   3e-19
gi|268519557|gb|FM888024.1|FM888024 FM888024 Jatropha curcas emb...    70   1e-12

>gi|268521592|gb|FM896800.1|FM896800 FM896800 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004204,
           mRNA sequence
          Length = 580

 Score = 93.7 bits (47), Expect = 9e-20
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                       
Query: 11  acaacatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccag 70
           ||||||||||| |||||||| |  |||||||| |||||||| ||||| ||||||||||||
Sbjct: 162 acaacatcaagcacagaatcaatgagctctgcgccttcagtgtaatggcctttagcccag 103

                                                          
Query: 71  ttattaccagccccattttggccaaaaacaaaattatcaggcctaaa 117
           || |||||||| |||  ||||||||| || || |||||||| |||||
Sbjct: 102 ttgttaccagcaccagattggccaaagacgaagttatcaggtctaaa 56


>gi|268517374|gb|FM887316.1|FM887316 FM887316 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000487,
           mRNA sequence
          Length = 549

 Score = 91.7 bits (46), Expect = 3e-19
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                       
Query: 14  acatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccagtta 73
           |||||||| |||||||| |  |||||||| |||||||| |||||||||||||||||||| 
Sbjct: 413 acatcaagcacagaatcaatgagctctgcgccttcagtgtaatgccctttagcccagttg 354

                                                 
Query: 74  ttaccagccccattttggccaaaaacaaaattatcagg 111
           |||||||| |||  ||||||||| || || ||||||||
Sbjct: 353 ttaccagcaccagattggccaaagacgaagttatcagg 316


>gi|268519557|gb|FM888024.1|FM888024 FM888024 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001336,
           mRNA sequence
          Length = 609

 Score = 69.9 bits (35), Expect = 1e-12
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 11  acaacatcaagaacagaatcgaccagctctgctccttcagtataatgccctttagcccag 70
           |||||||| ||||||| ||||| || ||| ||||| ||||||||||| ||||| ||||| 
Sbjct: 395 acaacatcgagaacagcatcgatcaactcggctccctcagtataatgacctttggcccaa 336

                      
Query: 71  ttattaccagc 81
           |||||||||||
Sbjct: 335 ttattaccagc 325