Jatropha Genome Database

JcCA0020831.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0020831.40 + phase: 2 /TE
         (3172 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516522|gb|FM889682.1|FM889682 FM889682 Jatropha curcas emb...   119   2e-26

>gi|268516522|gb|FM889682.1|FM889682 FM889682 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003394,
            mRNA sequence
          Length = 139

 Score =  119 bits (60), Expect = 2e-26
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                        
Query: 2099 gaagctcaggccatcatggattccttacataatggggagtccgggccacacatgcacggg 2158
            ||||||||  |||| |||||||||||||| |  ||||||||||| |||||||||||||||
Sbjct: 105  gaagctcaaaccattatggattccttacacatcggggagtccggtccacacatgcacggg 46

                                                        
Query: 2159 atagctctggctcgaaaaattatgaacatgggttattactggtc 2202
            |||||||| |||| ||||||||||||  ||||||||||||||||
Sbjct: 45   atagctctagctcaaaaaattatgaatctgggttattactggtc 2