Jatropha Genome Database

JcCA0020581.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0020581.20 + phase: 2 /TE
         (2852 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516522|gb|FM889682.1|FM889682 FM889682 Jatropha curcas emb...    98   7e-20

>gi|268516522|gb|FM889682.1|FM889682 FM889682 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003394,
            mRNA sequence
          Length = 139

 Score = 97.6 bits (49), Expect = 7e-20
 Identities = 91/105 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1778 gaagctcaaaccatcatggattctttacataatggggagtctggtccacacatgcacggg 1837
            |||||||||||||| |||||||| ||||| |  |||||||| ||||||||||||||||||
Sbjct: 105  gaagctcaaaccattatggattccttacacatcggggagtccggtccacacatgcacggg 46

                                                         
Query: 1838 atagccttggctcggaaaatcgtgaacctgggttattactggtca 1882
            |||||  | ||||  |||||  |||| ||||||||||||||||||
Sbjct: 45   atagctctagctcaaaaaattatgaatctgggttattactggtca 1