Jatropha Genome Database

JcCA0020001.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0020001.10 + phase: 0 /pseudo/partial
         (2016 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522526|gb|FM896530.1|FM896530 FM896530 Jatropha curcas emb...   224   3e-58

>gi|268522526|gb|FM896530.1|FM896530 FM896530 Jatropha curcas embryo
            71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003763,
            mRNA sequence
          Length = 503

 Score =  224 bits (113), Expect = 3e-58
 Identities = 128/133 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1810 gctgtctacatgaatgcgcccaatggatcaacagcaggcatggagaggtcccagttaggt 1869
            |||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct: 503  gctgtctacatgtatgcgccctatggatcaactgcaggcatggagtggtcccagttaggt 444

                                                                        
Query: 1870 cctatagtacatgctaaatgcaggtctgagtctagtgtggctccacctgaagatttcaga 1929
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443  cctatagtacatgctatatgcaggtctgagtctagtgtggctccacctgaagatttcaga 384

                         
Query: 1930 tgtgatgatgggg 1942
            |||||||||||||
Sbjct: 383  tgtgatgatgggg 371