Jatropha Genome Database
- JcCA0019701.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0019701.10 + phase: 0
(420 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268519445|gb|FM887912.1|FM887912 FM887912 Jatropha curcas emb... 391 e-109
gi|262091222|gb|GT228649.1|GT228649 JC214 Jatropha seeds from fr... 135 4e-32
gi|237680644|gb|GO246795.1|GO246795 JcrME_RL0339 Expressed seque... 119 3e-27
gi|268519612|gb|FM888079.1|FM888079 FM888079 Jatropha curcas emb... 84 1e-16
gi|268525271|gb|FM895913.1|FM895913 FM895913 Jatropha curcas emb... 74 1e-13
gi|268518690|gb|FM888933.1|FM888933 FM888933 Jatropha curcas emb... 62 5e-10
>gi|268519445|gb|FM887912.1|FM887912 FM887912 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001201,
mRNA sequence
Length = 441
Score = 391 bits (197), Expect = e-109
Identities = 197/197 (100%)
Strand = Plus / Minus
Query: 224 ctagggacaacaagaaaaaccgtatcgtcccaaggcacattcagcttgctgtgaggaatg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagggacaacaagaaaaaccgtatcgtcccaaggcacattcagcttgctgtgaggaatg 382
Query: 284 atgaagagcttagcaagctcttgggaactgttactattgcaaatgggggtgttttgccaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaagagcttagcaagctcttgggaactgttactattgcaaatgggggtgttttgccaa 322
Query: 344 atatccatcaaaatctgttgccaaagaaaatggggaaagggaaaggtgatattggttctg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatccatcaaaatctgttgccaaagaaaatggggaaagggaaaggtgatattggttctg 262
Query: 404 catcgcaagagttttaa 420
|||||||||||||||||
Sbjct: 261 catcgcaagagttttaa 245
>gi|262091222|gb|GT228649.1|GT228649 JC214 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL03SE.C08.scf 5', mRNA sequence
Length = 510
Score = 135 bits (68), Expect = 4e-32
Identities = 194/236 (82%)
Strand = Plus / Minus
Query: 112 tttctcaaagctggaaagtacgccgatcgcgtcggtgctggcgcccccgtttatctctcc 171
||||| || ||||||||||| ||||| || || |||||||| || ||||| ||||||||
Sbjct: 428 tttcttaaggctggaaagtatgccgagcgtgttggtgctggggctcccgtctatctctct 369
Query: 172 gctgtcctcgagtacctcgctgctgaggttcttgaacttgctggcaatgctgctagggac 231
||||| |||||||| || ||||||||||| | || |||||||| ||||| || || ||
Sbjct: 368 gctgttctcgagtatcttgctgctgaggtattggagcttgctgggaatgcagcgagagat 309
Query: 232 aacaagaaaaaccgtatcgtcccaaggcacattcagcttgctgtgaggaatgatgaagag 291
|| ||||| || ||||| || |||||||| ||||||||||||||||||||||| || |||
Sbjct: 308 aataagaagaatcgtattgtgccaaggcatattcagcttgctgtgaggaatgacgaggag 249
Query: 292 cttagcaagctcttgggaactgttactattgcaaatgggggtgttttgccaaatat 347
|| || || || |||| | ||||| ||||| ||||| ||||| |||||||||||
Sbjct: 248 ctgagtaaacttctgggctcagttaccattgccaatggtggtgtattgccaaatat 193
>gi|237680644|gb|GO246795.1|GO246795 JcrME_RL0339 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 650
Score = 119 bits (60), Expect = 3e-27
Identities = 192/236 (81%)
Strand = Plus / Plus
Query: 112 tttctcaaagctggaaagtacgccgatcgcgtcggtgctggcgcccccgtttatctctcc 171
||||| || ||||||||||| ||||| || || |||||||| || ||||| ||||||||
Sbjct: 214 tttcttaaggctggaaagtatgccgagcgtgttggtgctggggctcccgtctatctctct 273
Query: 172 gctgtcctcgagtacctcgctgctgaggttcttgaacttgctggcaatgctgctagggac 231
||||| |||||||| || ||||||||||| | || |||||||| ||||| || || ||
Sbjct: 274 gctgttctcgagtatcttgctgctgaggtattggagcttgctgggaatgcagcgagagat 333
Query: 232 aacaagaaaaaccgtatcgtcccaaggcacattcagcttgctgtgaggaatgatgaagag 291
|| ||||| || ||||| || || ||||| ||||||||||||||||||||||| | |||
Sbjct: 334 aataagaagaatcgtattgtgcccaggcatattcagcttgctgtgaggaatgacaaggag 393
Query: 292 cttagcaagctcttgggaactgttactattgcaaatgggggtgttttgccaaatat 347
|| || || || |||| | ||||| ||||| ||||| ||||| |||||||||||
Sbjct: 394 ctgagtaaacttctgggctcagttaccattgccaatggtggtgtattgccaaatat 449
>gi|268519612|gb|FM888079.1|FM888079 FM888079 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001408,
mRNA sequence
Length = 357
Score = 83.8 bits (42), Expect = 1e-16
Identities = 129/158 (81%)
Strand = Plus / Minus
Query: 190 gctgctgaggttcttgaacttgctggcaatgctgctagggacaacaagaaaaaccgtatc 249
||||||||||| | || |||||||| ||||| || || || || ||||| || |||||
Sbjct: 351 gctgctgaggtattggagcttgctgggaatgcagcgagagataataagaagaatcgtatt 292
Query: 250 gtcccaaggcacattcagcttgctgtgaggaatgatgaagagcttagcaagctcttggga 309
|| |||||||| ||||||||||||||||||||||| || ||||| || || || ||||
Sbjct: 291 gtgccaaggcatattcagcttgctgtgaggaatgacgaggagctgagtaaacttctgggc 232
Query: 310 actgttactattgcaaatgggggtgttttgccaaatat 347
| ||||| ||||| ||||| ||||| |||||||||||
Sbjct: 231 tcagttaccattgccaatggtggtgtattgccaaatat 194
>gi|268525271|gb|FM895913.1|FM895913 FM895913 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002919,
mRNA sequence
Length = 349
Score = 73.8 bits (37), Expect = 1e-13
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 235 aagaaaaaccgtatcgtcccaaggcacattcagcttgctgtgaggaatgatgaagagctt 294
||||| || ||||| || |||||||| ||||||||||||||||||||||| || |||||
Sbjct: 335 aagaagaatcgtattgtgccaaggcatattcagcttgctgtgaggaatgacgaggagctg 276
Query: 295 agcaagctcttgggaactgttactattgcaaatgggggtgttttgccaaatat 347
|| || || |||| | ||||| ||||| ||||| ||||| |||||||||||
Sbjct: 275 agtaaacttctgggttcagttaccattgccaatggtggtgtattgccaaatat 223
>gi|268518690|gb|FM888933.1|FM888933 FM888933 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002455,
mRNA sequence
Length = 465
Score = 61.9 bits (31), Expect = 5e-10
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 208 cttgctggcaatgctgctagggacaacaagaaaaaccgtatcgtcccaaggcacattcag 267
|||||||| |||||||| || || |||||||||||| | ||| |||| || ||||||||
Sbjct: 382 cttgctgggaatgctgcaagagataacaagaaaaacaggatcatccctagacacattcaa 441
Query: 268 cttgctgtgaggaatgatgaaga 290
||||| ||||| || ||||||||
Sbjct: 442 cttgcggtgagaaacgatgaaga 464
Score = 52.0 bits (26), Expect = 5e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 52 aaatcggtttccagatctcaaaaggctggtctccagtt 89
||||||||||| || ||||| |||||||||||||||||
Sbjct: 132 aaatcggtttctaggtctcataaggctggtctccagtt 169