Jatropha Genome Database
- JcCA0019181.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0019181.10 - phase: 0
(1512 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque... 472 e-133
gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas emb... 103 6e-22
gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed seque... 76 1e-13
>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 619
Score = 472 bits (238), Expect = e-133
Identities = 505/594 (85%)
Strand = Plus / Plus
Query: 574 cataaaagcaaaaatcaagaagcgttgctgaaaattattgatgatatagttgagtcactg 633
|||||||||||||| ||||| |||||| | || |||||||||| ||||||| |||
Sbjct: 20 cataaaagcaaaaaccaagaggcgttgttagaagttattgatgacatagttgtatcagga 79
Query: 634 ggaggtctcagtacagttgatatctttccttccttaaaatggctaccttcagtcaaaagg 693
|||||| |||| ||||||||||||||||||| || ||||||| ||| | | ||| |||
Sbjct: 80 ggaggtgctagtatagttgatatctttccttccctacaatggcttcctactgccaagagg 139
Query: 694 gaaaggtcaagaatttggaaattgcattgtgaaacagatgagattcttgaaggtatctta 753
||||| |||||||||||||||||||| | |||||||||||||| |||| |||||||
Sbjct: 140 gaaagatcaagaatttggaaattgcaccaaaatacagatgagattctcgaagatatctta 199
Query: 754 gaagagcataaagcgaacaggcaggccgcagctttcaagaacgacgatgggagccaagct 813
||||||||| ||| || || ||||| |||||| |||||| ||| ||||| |||||
Sbjct: 200 caagagcatagagctaaaagacaggcgacagcttccaagaattgggataggagcgaagct 259
Query: 814 gataatcttcttgatgttcttttggatcttcagcaaaatggaaatcttgaagttccttta 873
|||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||
Sbjct: 260 gataatcttcttgatgttcttttggatcttcaacagagcggaaatcttgatgttccttta 319
Query: 874 actgacgtcaacatcaaagcagtaatccttggtatgtttggcgctggaagcgacacatcc 933
||||| ||| ||||||||||| ||| ||| ||||||||| ||||||||||||||||||
Sbjct: 320 actgatgtcgccatcaaagcagcaattattgatatgtttggtgctggaagcgacacatcc 379
Query: 934 tccaaaacaacagaatgggcaatggcggagttgatgaaaaatccggaaataatgaaaaag 993
|| ||||| |||||||||||||||| |||||||||| ||||| ||| ||||||| ||
Sbjct: 380 tcaaaaactgcagaatgggcaatggctgagttgatgaggaatccagaagtaatgaagaaa 439
Query: 994 gcacaagaagaattgcggagtttgtttggtgaaagtggatacgttgatgaagcaaaactt 1053
||||||||||||||||||| ||| |||||||||| |||| | | ||| ||||||||||||
Sbjct: 440 gcacaagaagaattgcggaatttctttggtgaaaatggaaaggatgaggaagcaaaactt 499
Query: 1054 cacgaaataaaatggttgaagttaattattaatgaaacattgagattacatcctgcagtt 1113
|||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 cacgaattaaaatggataaagttaattattaaagaaacattgagattacatcctgcagtg 559
Query: 1114 acattaattccaaggctttgcagggaaaagaccaaagttagtggatatgacgtt 1167
| ||||||||||| |||| ||||||||||| |||||| |||||||||||||
Sbjct: 560 gctgtaattccaagggtttgtagggaaaagactaaagtttatggatatgacgtt 613
>gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001583,
mRNA sequence
Length = 258
Score = 103 bits (52), Expect = 6e-22
Identities = 115/136 (84%)
Strand = Plus / Minus
Query: 1373 ttgcaaatttgctatatcattttgactggaaacttcctaaaggaataacttcggagaatc 1432
||||||| | |||||||||||| |||||||| ||||||||||| ||||| | || ||||
Sbjct: 243 ttgcaaactggctatatcatttgtactggaaatttcctaaaggagtaactgcagaaaatc 184
Query: 1433 ttgacatgactgagaattttggaggagttatcaaaagaaaacaagaccttgaattgattc 1492
||||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||| |
Sbjct: 183 ttgacatgaatgaagcttttggaggagctgtcaaaagaaaagtagaccttgaattgatcc 124
Query: 1493 ccgcaccattccgtcc 1508
|| |||||||||||
Sbjct: 123 ccattccattccgtcc 108
>gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 700
Score = 75.8 bits (38), Expect = 1e-13
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 1309 tttggtgcaggaagaagaatatgccctggaatggcattcggtatggttaatctagagatt 1368
|||||||| |||| ||||| |||||||||||| |||| || || ||||| || ||
Sbjct: 340 tttggtgcgggaaagagaatttgccctggaatgacattagggataacaaatcttgaactt 399
Query: 1369 ttccttgcaaatttgctatatcattttgactggaaacttcct 1410
||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 400 ttcctggcaaatttgctatatcattttgattggaaacttcct 441
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1087 gaaacattgagattacatcctgcagttacattaattccaag 1127
||||| ||||||||||||||||| || |||||||||||||
Sbjct: 118 gaaactttgagattacatcctgctgtgccattaattccaag 158