Jatropha Genome Database

JcCA0015371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0015371.10 + phase: 0 
         (1320 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas emb...   783   0.0  

>gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004251,
           mRNA sequence
          Length = 525

 Score =  783 bits (395), Expect = 0.0
 Identities = 469/497 (94%), Gaps = 2/497 (0%)
 Strand = Plus / Plus

                                                                       
Query: 205 ctttttagtgctaaaagagttcaatcgtttcaatcc-gttagagaagaagaagtgggtct 263
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 1   ctttttagtgctaaaagagctcaatcgtttcaatcctgttagagaagaagaagtgggtct 60

                                                                       
Query: 264 tttcatagattcgattttaaaannnnnnnnnnnnnnnnnncctgtggatcttagtgaaaa 323
           ||||||||||||||||||||||                  ||||||||||||||||||||
Sbjct: 61  tttcatagattcgattttaaaatcttcttcttcttcttctcctgtggatcttagtgaaaa 120

                                                                       
Query: 324 aattatgtctcttactgcaaatgttacttgtagagtagcttttgggaatagttttgcagc 383
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 121 aattatgtctcttactgcaaatgttacttgtagagtagcttttgggaatagttttgcaac 180

                                                                       
Query: 384 aagaggatttacccaggaaaggtttcaagaagtgattcatgaagcttttgccaagttagg 443
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 181 aagaggatttacccaggaaaggtttcaagaagtgattcatgaagctttagccaagttagg 240

                                                                       
Query: 444 gggtttttctgcatctgacttttttccttatgtgggttggattgttgatagggttacagg 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggtttttctgcatctgacttttttccttatgtgggttggattgttgatagggttacagg 300

                                                                       
Query: 504 tctccattcaaaactggaaagaagctttcaagaacttgatgaattctaccagaagattat 563
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 tctccattcaaaactggaaagaagctttcaagaacttgatgaattccaccagaagattat 360

                                                                       
Query: 564 tgaggatcatatccaaaagggaaaagagaagcatggacatcaagatattgtcgatgtttt 623
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | 
Sbjct: 361 tgaggatcatatccaaaacggaaaagagaagcatggacatcaagatattgtcgatgtata 420

                                                                       
Query: 624 gttggatttggagagatatcaaactgaatctgaaggaattcaattctctaaaagtcac-a 682
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 421 gtcggatttggagagatatcaaactgaatctgaaggaattcaattctctaaaagtcacaa 480

                            
Query: 683 tcaaagcaattatcatg 699
           |||||||||||||||||
Sbjct: 481 tcaaagcaattatcatg 497