Jatropha Genome Database

JcCA0003732.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0003732.20 + phase: 0 
         (822 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523521|gb|FM893844.1|FM893844 FM893844 Jatropha curcas emb...    88   2e-17

>gi|268523521|gb|FM893844.1|FM893844 FM893844 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004773,
           mRNA sequence
          Length = 643

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 75/84 (89%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                       
Query: 129 aacaaatactagaactccaggtccacctgtcaaattttcaaatgacacagagagactcca 188
           ||||||| | || ||||||||||||||||   |||||||||||||||| |||||||| ||
Sbjct: 557 aacaaatccaaggactccaggtccacctggtcaattttcaaatgacacggagagact-ca 615

                                   
Query: 189 acacatcaacagtattcgaaaagc 212
           |||||||||||| |||||||||||
Sbjct: 616 acacatcaacagcattcgaaaagc 639



 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 8   tgcatgaaaagttagatagattcaagaagcagcaagagaagtgccaa 54
           |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgcaagaaaaattagatagattcaagaagcagcaagagaagtgccaa 482