Jatropha Genome Database

JcCA0003732.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0003732.10 + phase: 1 /pseudo/partial
         (1304 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524794|gb|FM895492.1|FM895492 FM895492 Jatropha curcas emb...   458   e-129
gi|268517893|gb|FM893268.1|FM893268 FM893268 Jatropha curcas emb...   436   e-122
gi|268521168|gb|FM891887.1|FM891887 FM891887 Jatropha curcas emb...   274   2e-73

>gi|268524794|gb|FM895492.1|FM895492 FM895492 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002423,
           mRNA sequence
          Length = 533

 Score =  458 bits (231), Expect = e-129
 Identities = 300/323 (92%), Gaps = 15/323 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacttttagccggatagatcctggaggcaaacttgtcatgggatttcgcaaggctacaa 60
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 211 taacttttagccggatagatcctgagggcaaacttgtcatgggatttcgcaaggctacaa 270

                                                                       
Query: 61  acaactctttagatacacaggatgcccaaacatctacaattcctaatagtgctgctatca 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 271 acaactctttagatacacaggatgcccaaacatctgcaattcctaatagtgctgctatca 330

                                                                       
Query: 121 ccgaagcttctttttctggtattg------tt-------acaag--tgagaatcacggag 165
           ||||| |||||||||||| |  ||      ||       |||||  ||||||||||||||
Sbjct: 331 ccgaaacttctttttctgctgatggggatattggctggaacaagagtgagaatcacggag 390

                                                                       
Query: 166 gcagggtaaatggggatgcactgctgcaaccaacgtcagagaagaaaagaactcgaaata 225
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 391 gcagggtaaatggggatgcactgctgcaatcaacgtcagagaagaaaagaactcgaaata 450

                                                                       
Query: 226 ttggacctaagaataagcgattactcatgaatagtgaagatgctttggagctgcgactta 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttggacctaagaataagcgattactcatgaatagtgaagatgctttggagctgcgactta 510

                                  
Query: 286 catgggaagaagcgcaggacttg 308
           |||||||||||||||||||||||
Sbjct: 511 catgggaagaagcgcaggacttg 533


>gi|268517893|gb|FM893268.1|FM893268 FM893268 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb2_004051,
            mRNA sequence
          Length = 439

 Score =  436 bits (220), Expect = e-122
 Identities = 247/256 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1049 agacttaaattgtcatcctaacggcgaggatatacagatggacatcccaggattgagcat 1108
            |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 439  agacttaaattgtcatcctaaccgcgaggatatacagatggacatcgcaggattgagcat 380

                                                                        
Query: 1109 aatggaccttgctgatgcagccaacatgccatttgacaattatatcaaggaaaatgggct 1168
            |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 379  aatggaccttgctgatgcagcctacatgccatttgacaattatatcaagcaaaatgggct 320

                                                                        
Query: 1169 ttcaagcttgatgtgtgaccggcaggcgagcttgggatcctgttcccattcacaatctga 1228
            |||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| |
Sbjct: 319  ttcaagcttgatgtgtgaccggcaggcgagcttgggttcctgttcacattgacaatctaa 260

                                                                        
Query: 1229 tggtgagaatctgagacggctgtctgatgaagcatttctggcatctatcggttgggatcg 1288
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259  tggtgagaatctgagacggctgtctgatgaggcatttctggcatctatcggttgggatcg 200

                            
Query: 1289 tgagagtagaggtgat 1304
            ||||||||||||||||
Sbjct: 199  tgagagtagaggtgat 184


>gi|268521168|gb|FM891887.1|FM891887 FM891887 Jatropha curcas embryo
            56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002291,
            mRNA sequence
          Length = 388

 Score =  274 bits (138), Expect = 2e-73
 Identities = 153/158 (96%)
 Strand = Plus / Plus

                                                                        
Query: 1147 attatatcaaggaaaatgggctttcaagcttgatgtgtgaccggcaggcgagcttgggat 1206
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5    attatatcaagcaaaatgggctttcaagcttgatgtgtgaccggcaggcgagcttgggtt 64

                                                                        
Query: 1207 cctgttcccattcacaatctgatggtgagaatctgagacggctgtctgatgaagcatttc 1266
            ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 65   cctgttcacattcacaatctaatggtgagaatctgagacggctgtctgatgaggcatttc 124

                                                  
Query: 1267 tggcatctatcggttgggatcgtgagagtagaggtgat 1304
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 125  tggcatctatcggttgggatcgtgagagtagaggtgat 162