Jatropha Genome Database
- JcCA0003212.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0003212.20 - phase: 0
(456 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268524451|gb|FM895131.1|FM895131 FM895131 Jatropha curcas emb... 904 0.0
gi|268525345|gb|FM895987.1|FM895987 FM895987 Jatropha curcas emb... 644 0.0
gi|268519988|gb|FM889836.1|FM889836 FM889836 Jatropha curcas emb... 406 e-114
gi|268519370|gb|FM887837.1|FM887837 FM887837 Jatropha curcas emb... 256 2e-68
gi|237680558|gb|GO246770.1|GO246770 JcrME_RL0314 Expressed seque... 163 2e-40
gi|268523601|gb|FM892134.1|FM892134 FM892134 Jatropha curcas emb... 157 1e-38
gi|268525960|gb|FM891216.1|FM891216 FM891216 Jatropha curcas emb... 157 1e-38
>gi|268524451|gb|FM895131.1|FM895131 FM895131 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001909,
mRNA sequence
Length = 669
Score = 904 bits (456), Expect = 0.0
Identities = 456/456 (100%)
Strand = Plus / Plus
Query: 1 atgggtcgcatgcacagtcgaggtaagggtatttcagcttccgctttgccttataagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 atgggtcgcatgcacagtcgaggtaagggtatttcagcttccgctttgccttataagagg 98
Query: 61 acaccgcccagttggctgaagatatctgctcaggatgtcgaggataacatctgcaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 acaccgcccagttggctgaagatatctgctcaggatgtcgaggataacatctgcaaattt 158
Query: 121 gcaaagaaaggcttgactccatctcaaattggtgtcatccttcgtgattctcatggtatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gcaaagaaaggcttgactccatctcaaattggtgtcatccttcgtgattctcatggtatt 218
Query: 181 gcccaagtgaggagtgttactggtaacaagattttgcggatattgaaggcacatgggctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gcccaagtgaggagtgttactggtaacaagattttgcggatattgaaggcacatgggctt 278
Query: 241 gctcctgaaatacctgaagatttgtaccacctcatcaagaaagcagttgccattaggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gctcctgaaatacctgaagatttgtaccacctcatcaagaaagcagttgccattaggaaa 338
Query: 301 catttggagaggaacaggaaggataaagattccaaatttaggttgattttggttgagagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 catttggagaggaacaggaaggataaagattccaaatttaggttgattttggttgagagc 398
Query: 361 aggatccaccgcctagctcgctattacaagaagacaaagaagcttccaccagtatggaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aggatccaccgcctagctcgctattacaagaagacaaagaagcttccaccagtatggaaa 458
Query: 421 tatgaatcaactactgccagcacccttgtggcatag 456
||||||||||||||||||||||||||||||||||||
Sbjct: 459 tatgaatcaactactgccagcacccttgtggcatag 494
>gi|268525345|gb|FM895987.1|FM895987 FM895987 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003110,
mRNA sequence
Length = 591
Score = 644 bits (325), Expect = 0.0
Identities = 338/341 (99%), Gaps = 1/341 (0%)
Strand = Plus / Minus
Query: 117 atttgcaaagaaaggcttgactccatctcaaa-ttggtgtcatccttcgtgattctcatg 175
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 591 atttgcaaagaaagccttgactccatctcaaaattggtgtcatccttcgtgattctcatg 532
Query: 176 gtattgcccaagtgaggagtgttactggtaacaagattttgcggatattgaaggcacatg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtattgcccaagtgaggagtgttactggtaacaagattttgcggatattgaaggcacatg 472
Query: 236 ggcttgctcctgaaatacctgaagatttgtaccacctcatcaagaaagcagttgccatta 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggcttgctcctgaaatacctgaagatttgtaccacctcatcaagaaagcagttgccatta 412
Query: 296 ggaaacatttggagaggaacaggaaggataaagattccaaatttaggttgattttggttg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggaaacatttggagaggaacaggaaggataaagattccaaatttaggttgattttggttg 352
Query: 356 agagcaggatccaccgcctagctcgctattacaagaagacaaagaagcttccaccagtat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agagcaggatccaccgcctagctcgctattacaagaagacaaagaagcttccaccagtat 292
Query: 416 ggaaatatgaatcaactactgccagcacccttgtggcatag 456
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 291 ggaaatatgaatcaactactgccagcaccctcgtggcatag 251
>gi|268519988|gb|FM889836.1|FM889836 FM889836 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003574,
mRNA sequence
Length = 361
Score = 406 bits (205), Expect = e-114
Identities = 212/213 (99%), Gaps = 1/213 (0%)
Strand = Plus / Plus
Query: 245 ctgaaatacct-gaagatttgtaccacctcatcaagaaagcagttgccattaggaaacat 303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgaaatacctngaagatttgtaccacctcatcaagaaagcagttgccattaggaaacat 60
Query: 304 ttggagaggaacaggaaggataaagattccaaatttaggttgattttggttgagagcagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggagaggaacaggaaggataaagattccaaatttaggttgattttggttgagagcagg 120
Query: 364 atccaccgcctagctcgctattacaagaagacaaagaagcttccaccagtatggaaatat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atccaccgcctagctcgctattacaagaagacaaagaagcttccaccagtatggaaatat 180
Query: 424 gaatcaactactgccagcacccttgtggcatag 456
|||||||||||||||||||||||||||||||||
Sbjct: 181 gaatcaactactgccagcacccttgtggcatag 213
>gi|268519370|gb|FM887837.1|FM887837 FM887837 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001114,
mRNA sequence
Length = 491
Score = 256 bits (129), Expect = 2e-68
Identities = 148/153 (96%), Gaps = 1/153 (0%)
Strand = Plus / Minus
Query: 305 tggagaggaacaggaaggataaagattccaaatttagg-ttgattttggttgagagcagg 363
||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 491 tggagaggaacagtaaggataaagattccaaatgtaggcttgattttggttgagagcagt 432
Query: 364 atccaccgcctagctcgctattacaagaagacaaagaagcttccaccagtatggaaatat 423
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atccaccgcctagctcgctataacaagaagacaaagaagcttccaccagtatggaaatat 372
Query: 424 gaatcaactactgccagcacccttgtggcatag 456
|||||||||||||||||||||||||||||||||
Sbjct: 371 gaatcaactactgccagcacccttgtggcatag 339
>gi|237680558|gb|GO246770.1|GO246770 JcrME_RL0314 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 400
Score = 163 bits (82), Expect = 2e-40
Identities = 211/254 (83%)
Strand = Plus / Plus
Query: 199 actggtaacaagattttgcggatattgaaggcacatgggcttgctcctgaaatacctgaa 258
||||| |||||||||||||| || | ||||| ||||| ||||| |||||||| |||||
Sbjct: 7 actggaaacaagattttgcgcatccttaaggctcatggtcttgcccctgaaattcctgag 66
Query: 259 gatttgtaccacctcatcaagaaagcagttgccattaggaaacatttggagaggaacagg 318
|||||||| || ||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct: 67 gatttgtatcatctcatcaagaaggctgttgcaattaggaagcatttggagaggaacaga 126
Query: 319 aaggataaagattccaaatttaggttgattttggttgagagcaggatccaccgcctagct 378
|| ||||| |||||||| || |||||||| | || |||||| |||| ||| | || |||
Sbjct: 127 aaagataaggattccaagttcaggttgatccttgtagagagccggattcacaggcttgct 186
Query: 379 cgctattacaagaagacaaagaagcttccaccagtatggaaatatgaatcaactactgcc 438
|| || |||||||| || |||||||| || || || |||||||| || ||||| |||||
Sbjct: 187 cgatactacaagaaaacgaagaagctacctcctgtttggaaatacgagtcaaccactgct 246
Query: 439 agcacccttgtggc 452
||||| ||||||||
Sbjct: 247 agcacacttgtggc 260
>gi|268523601|gb|FM892134.1|FM892134 FM892134 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002623,
mRNA sequence
Length = 434
Score = 157 bits (79), Expect = 1e-38
Identities = 163/191 (85%)
Strand = Plus / Plus
Query: 256 gaagatttgtaccacctcatcaagaaagcagttgccattaggaaacatttggagaggaac 315
|||||||||||||| | |||||||| |||||||| ||| | || |||||||||||||||
Sbjct: 57 gaagatttgtaccatttgatcaagaaggcagttgcgattcgcaagcatttggagaggaac 116
Query: 316 aggaaggataaagattccaaatttaggttgattttggttgagagcaggatccaccgccta 375
||||||||||| |||||||| || |||||||||||||| || || ||||||||| | ||
Sbjct: 117 aggaaggataaggattccaagttcaggttgattttggtggaaagtaggatccacaggctc 176
Query: 376 gctcgctattacaagaagacaaagaagcttccaccagtatggaaatatgaatcaactact 435
|||||||| |||||||| || |||||||| || || || |||||||| || ||||||||
Sbjct: 177 gctcgctactacaagaaaaccaagaagctccctcctgtttggaaatacgagtcaactaca 236
Query: 436 gccagcaccct 446
|| ||||||||
Sbjct: 237 gcaagcaccct 247
>gi|268525960|gb|FM891216.1|FM891216 FM891216 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001338,
mRNA sequence
Length = 472
Score = 157 bits (79), Expect = 1e-38
Identities = 256/310 (82%), Gaps = 5/310 (1%)
Strand = Plus / Minus
Query: 143 ctcaaattggtgtcatccttcgtgattctcatggtattgcccaagtgaggagtgttactg 202
|||| ||||||||||| | ||||||||||||||||||||| || |||||||||| ||||
Sbjct: 472 ctcagattggtgtcattcgtcgtgattctcatggtattgctcagttgaggagtgtcactg 413
Query: 203 gtaacaagattttgcggatattgaaggcacatgggcttgctcctgaaatacctgaagatt 262
| ||||||||||||| || | ||||| ||||| |||||||||||||| ||||| ||||
Sbjct: 412 gatacaagattttgcgcatccttaaggctcatggtcttgctcctgaaattcctgaggatt 353
Query: 263 tgtaccacctcatcaagaaagcagttgccattaggaaacatttggagaggaacaggaagg 322
|| || ||||||||||| || ||||| |||||||| || |||||||||||||| || |
Sbjct: 352 tg-gtcatctcatcaagaaggctgttgcaattaggaagca-ttggagaggaacagaaaag 295
Query: 323 ataaagattccaaatttaggttgattttggttgagagcaggatccaccgcctagctcgct 382
|||| |||||||| || |||||||| | || |||||| |||| ||| || ||||| |
Sbjct: 294 ataaggattccaagttcaggttgatcct-gtagagagccggattcacggc--tgctcgat 238
Query: 383 attacaagaagacaaagaagcttccaccagtatggaaatatgaatcaactactgccagca 442
| |||||||| || |||||||| || || || |||||||| || ||||| ||||| ||||
Sbjct: 237 actacaagaaaacgaagaagctacctcctgtttggaaatacgagtcaaccactgctagca 178
Query: 443 cccttgtggc 452
| ||||||||
Sbjct: 177 cacttgtggc 168