Jatropha Genome Database
- JcCA0000831.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0000831.20 - phase: 0
(1428 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680533|gb|GO246684.1|GO246684 JcrME_RL0228 Expressed seque... 1231 0.0
gi|268522481|gb|FM894626.1|FM894626 FM894626 Jatropha curcas emb... 912 0.0
gi|268520433|gb|FM890281.1|FM890281 FM890281 Jatropha curcas emb... 525 e-149
>gi|237680533|gb|GO246684.1|GO246684 JcrME_RL0228 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 700
Score = 1231 bits (621), Expect = 0.0
Identities = 640/645 (99%), Gaps = 1/645 (0%)
Strand = Plus / Minus
Query: 72 ttatactcctgagtatcaaaccaaagatactgatatcttggcagcattccgagtaactcc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttatactcctgagtatcaaaccaaagatactgatatcttggcagcattccgagtaactcc 641
Query: 132 tcaacctggagttccgcctgaggaagcaggagctgcggtagctgctgaatcttctactgg 191
|||||||| |||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct: 640 tcaacctg-agttccgcctgaagaagcagcagctgccgtagctgctgaatcttctactgg 582
Query: 192 tacatggacaactgtgtggaccgatgggcttaccagtcttgatcgttataaaggacgatg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tacatggacaactgtgtggaccgatgggcttaccagtcttgatcgttataaaggacgatg 522
Query: 252 ctacgacatcgagcccgttgctggagaagaaaatcaatatattgcttatgtagcttaccc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ctacgacatcgagcccgttgctggagaagaaaatcaatatattgcttatgtagcttaccc 462
Query: 312 cttagacctttttgaagaaggttctgttactaacatgtttacttccattgtgggtaatgt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cttagacctttttgaagaaggttctgttactaacatgtttacttccattgtgggtaatgt 402
Query: 372 atttgggttcaaagccctacgcgccctacgtctggaggatttgcgaatccctactgctta 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atttgggttcaaagccctacgcgccctacgtctggaggatttgcgaatccctactgctta 342
Query: 432 tactaaaactttccaagggccgcctcatggtatccaagttgagagagataaattgaacaa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tactaaaactttccaagggccgcctcatggtatccaagttgagagagataaattgaacaa 282
Query: 492 gtatggtcgccccctattgggttgtactattaaacctaaattggggctatccgctaagaa 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtatggtcgccccctattgggttgtactattaaacctaaattggggctatccgctaagaa 222
Query: 552 ttatggtagagcggtttatgaatgtcttcgcggtggacttgattttaccaaagatgatga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 221 ttatggtagagcggtttatgaatgtcttcgcggtggacttgattttaccaaagatgacga 162
Query: 612 gaacgtgaattcccaaccatttatgcgttggagagaccgtttcttattttgtgccgaagc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gaacgtgaattcccaaccatttatgcgttggagagaccgtttcttattttgtgccgaagc 102
Query: 672 aatttataaagcacaggctgaaacaggtgaaatcaaaggacatta 716
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aatttataaagcacaggctgaaacaggtgaaatcaaaggacatta 57
>gi|268522481|gb|FM894626.1|FM894626 FM894626 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000433,
mRNA sequence
Length = 535
Score = 912 bits (460), Expect = 0.0
Identities = 470/472 (99%), Gaps = 1/472 (0%)
Strand = Plus / Plus
Query: 957 tttgtctggtggagatcatattcacgctggtaccgtagtaggtaaacttgaaggggaaag 1016
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tttgtctggtggagatcatattcacgctggtaccgtagtag-taaacttgaaggggaaag 59
Query: 1017 agacatcactttgggctttgttgatttactgcgtgatgattttattgaaaaagatcgaag 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 agacatcactttgggctttgttgatttactgcgtgatgattttattgaaaaagatcgaag 119
Query: 1077 ccgcggtatttatttcactcaagattgggtctctctaccgggtgttttgcctgtagcttc 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ccgcggtatttatttcactcaagattgggtctctctaccgggtgttttgcctgtagcttc 179
Query: 1137 aggaggtattcacgtttggcatatgcctgctctgaccgagatctttggagatgattccgt 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aggaggtattcacgtttggcatatgcctgctctgaccgagatctttggagatgattccgt 239
Query: 1197 actacaattcggtggaggaactttagggcacccttggggaaatgcacctggtgccgtagc 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 actacaattcggtggaggaactttagggcacccttggggaaatgcacctggtgccgtagc 299
Query: 1257 taatcgagtagctctagaagcatgtgtacaagctcgtaatgaaggacgtgatcttgctcg 1316
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 300 taatcgagtagctctagaagcatgtgtacaagctcgtaatgaaggccgtgatcttgctcg 359
Query: 1317 tgagggtaatgaaattatccgtgaggctagcaaatggagtcctgaactagctgctgcttg 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgagggtaatgaaattatccgtgaggctagcaaatggagtcctgaactagctgctgcttg 419
Query: 1377 tgaagtatggaaggagattaaatttgaattccaagcgatggatactttgtaa 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgaagtatggaaggagattaaatttgaattccaagcgatggatactttgtaa 471
>gi|268520433|gb|FM890281.1|FM890281 FM890281 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004104,
mRNA sequence
Length = 480
Score = 525 bits (265), Expect = e-149
Identities = 265/265 (100%)
Strand = Plus / Minus
Query: 1 atgtcaccacaaacagagactaaagcaagtgttggattcaaggctggtgttaaagattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtcaccacaaacagagactaaagcaagtgttggattcaaggctggtgttaaagattat 206
Query: 61 aaattgacttattatactcctgagtatcaaaccaaagatactgatatcttggcagcattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaattgacttattatactcctgagtatcaaaccaaagatactgatatcttggcagcattc 146
Query: 121 cgagtaactcctcaacctggagttccgcctgaggaagcaggagctgcggtagctgctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 cgagtaactcctcaacctggagttccgcctgaggaagcaggagctgcggtagctgctgaa 86
Query: 181 tcttctactggtacatggacaactgtgtggaccgatgggcttaccagtcttgatcgttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tcttctactggtacatggacaactgtgtggaccgatgggcttaccagtcttgatcgttat 26
Query: 241 aaaggacgatgctacgacatcgagc 265
|||||||||||||||||||||||||
Sbjct: 25 aaaggacgatgctacgacatcgagc 1