Jatropha Genome Database

JcCA0000182.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0000182.20 + phase: 2 /TE
         (1981 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520575|gb|FM889333.1|FM889333 FM889333 Jatropha curcas emb...   105   2e-22

>gi|268520575|gb|FM889333.1|FM889333 FM889333 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002972,
            mRNA sequence
          Length = 499

 Score =  105 bits (53), Expect = 2e-22
 Identities = 197/245 (80%)
 Strand = Plus / Minus

                                                                        
Query: 1736 agaaggattgctcgtttctacaataaacgggtacatccaagggctctaaagaatggacat 1795
            |||| ||||||| ||||||||| ||| ||||||||||||||| || | || | |||| ||
Sbjct: 263  agaatgattgcttgtttctacagtaagcgggtacatccaaggactttgaaaagtggagat 204

                                                                        
Query: 1796 taggtactgatcaaattgttggatcatgaagcccagaataatcctggtgggaaattcaaa 1855
            |  ||  |||||| | |||| || || ||| |||||||| | ||| | |||||||||| |
Sbjct: 203  tcagtgttgatcagactgttagaccacgaatcccagaatcaccctagagggaaattcaga 144

                                                                        
Query: 1856 cccaactggcatggaccattcagaattcagaagctattagttaaaggtgccgctgaatta 1915
             |||| |||||||||||||||| ||| ||| |||| |  | ||| |||||||||||||| 
Sbjct: 143  accaattggcatggaccattcaaaatccaggagctgtcggataagggtgccgctgaattg 84

                                                                        
Query: 1916 atcaccatggaagggaagcctgtcaaccggattatcaatcaggatcaaatgaaaagattc 1975
             ||||   ||||||||||||||| || |||||| ||| ||| || |||||||| ||||||
Sbjct: 83   gtcacttcggaagggaagcctgttaatcggattgtcagtcaagaacaaatgaagagattc 24

                 
Query: 1976 tatgt 1980
             ||||
Sbjct: 23   aatgt 19