Jatropha Genome Database
- JcCA0000051.40
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0000051.40 - phase: 0 /partial
(528 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268517431|gb|FM889149.1|FM889149 FM889149 Jatropha curcas emb... 773 0.0
gi|268519338|gb|FM887805.1|FM887805 FM887805 Jatropha curcas emb... 583 e-167
gi|268519989|gb|FM889837.1|FM889837 FM889837 Jatropha curcas emb... 389 e-108
gi|268518190|gb|FM888464.1|FM888464 FM888464 Jatropha curcas emb... 355 3e-98
gi|268519358|gb|FM887825.1|FM887825 FM887825 Jatropha curcas emb... 319 2e-87
gi|268520487|gb|FM890335.1|FM890335 FM890335 Jatropha curcas emb... 240 1e-63
gi|268519262|gb|FM887729.1|FM887729 FM887729 Jatropha curcas emb... 182 3e-46
>gi|268517431|gb|FM889149.1|FM889149 FM889149 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002735,
mRNA sequence
Length = 467
Score = 773 bits (390), Expect = 0.0
Identities = 413/423 (97%)
Strand = Plus / Minus
Query: 106 cccttaggcacggccatacataacatagaaatcacacttggaaagggtggacaattagct 165
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 467 cccttaggcacggccatacataacatagaattcacacttggaaagggtggacaattagct 408
Query: 166 agagctgcaggtgctgtagcgaaactgattgcaaaagaggggaaatcggccacattaaaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agagctgcaggtgctgtagcgaaactgattgcaaaagaggggaaatcggccacattaaaa 348
Query: 226 ttaccttctggggaggttcgtttaatatccaaaaactgctcagcaacagtcggacaagta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttaccttctggggaggttcgtttaatatccaaaaactgctcagcaacagtcggacaagta 288
Query: 286 ggcaatactggggtgaaccagaaaagtttgggtagagccggatctaaatgttggctaggt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggcaatactggggtgaaccagaaaagtttgggtagagccggatctaaatgttggctaggt 228
Query: 346 aagcgtcctgtagtaagaggagtagttatgaaccctgtagaccatccccatgggggtggt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aagcgtcctgtagtaagaggagtagttatgaaccctgtagaccatccccatgggggtggt 168
Query: 406 gaagggagggccccaattggtagnnnnnnncccgcaaccccttgggggtatcctgcactt 465
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct: 167 gaagggagggccccaattggtagaaaaaaacccgcaacccattgggggtatcttgcactt 108
Query: 466 ggaagaagaagtagaaaaaggaataaatatagtgataatttgattcttcgtcgccgtact 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ggaagaagaagtagaaaaaggaataaatatagtgataatttgattcttcgtcgccgtact 48
Query: 526 aag 528
|||
Sbjct: 47 aag 45
>gi|268519338|gb|FM887805.1|FM887805 FM887805 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001075,
mRNA sequence
Length = 577
Score = 583 bits (294), Expect = e-167
Identities = 304/306 (99%), Gaps = 1/306 (0%)
Strand = Plus / Plus
Query: 1 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 329
Query: 61 gaggttttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gaggttttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 389
Query: 121 atacataacatagaaatcacacttggaaagggtggacaattagctagagctgcaggtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atacataacatagaaatcacacttggaaagggtggacaattagctagagctgcaggtgct 449
Query: 181 gtagcgaaactgattgcaaaagaggggaaatcggccacattaaaattaccttctggggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtagcgaaactgattgcaaaagaggggaaatcggccacattaaaattaccttctggggag 509
Query: 241 gttcgtttaatatcc-aaaaactgctcagcaacagtcggacaagtaggcaatactggggt 299
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 510 gttcgtttaatatccaaaaaactgctcagcaacagtccgacaagtaggcaatactggggt 569
Query: 300 gaacca 305
||||||
Sbjct: 570 gaacca 575
>gi|268519989|gb|FM889837.1|FM889837 FM889837 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003575,
mRNA sequence
Length = 522
Score = 389 bits (196), Expect = e-108
Identities = 210/217 (96%)
Strand = Plus / Minus
Query: 312 tttgggtagagccggatctaaatgttggctaggtaagcgtcctgtagtaagaggagtagt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tttgggtagagccggatctaaatgttggctaggtaagcgtcctgtagtaagaggagtagt 463
Query: 372 tatgaaccctgtagaccatccccatgggggtggtgaagggagggccccaattggtagnnn 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tatgaaccctgtagaccatccccatgggggtggtgaagggagggccccaattggtagaaa 403
Query: 432 nnnncccgcaaccccttgggggtatcctgcacttggaagaagaagtagaaaaaggaataa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aaaacccgcaaccccttgggggtatcctgcacttggaagaagaagtagaaaaaggaataa 343
Query: 492 atatagtgataatttgattcttcgtcgccgtactaag 528
|||||||||||||||||||||||||||||||||||||
Sbjct: 342 atatagtgataatttgattcttcgtcgccgtactaag 306
>gi|268518190|gb|FM888464.1|FM888464 FM888464 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001885,
mRNA sequence
Length = 566
Score = 355 bits (179), Expect = 3e-98
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 1 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 120
Query: 61 gaggttttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gaggttttgattgatcaaaaagaagaatctacttcaaccgatatgcccttaggcacggcc 60
Query: 121 atacataacatagaaatcacacttggaaagggtggacaattagctagagctgcaggtgc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 atacataacatagaaatcacacttggaaagggtggacaattagctagagctgcaggtgc 1
>gi|268519358|gb|FM887825.1|FM887825 FM887825 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001101,
mRNA sequence
Length = 574
Score = 319 bits (161), Expect = 2e-87
Identities = 191/201 (95%), Gaps = 3/201 (1%)
Strand = Plus / Plus
Query: 328 tctaaatgttggctaggtaagcgtcctgtagtaagaggagtagttatgaaccctgtagac 387
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tctaaatgttggctaggta--cgtcctgta-taagaggagtagttatgaaccctgtagac 57
Query: 388 catccccatgggggtggtgaagggagggccccaattggtagnnnnnnncccgcaacccct 447
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 58 catccccatgggggtggtgaagggagggccccaattggtagaaaaaaacccgcaacccct 117
Query: 448 tgggggtatcctgcacttggaagaagaagtagaaaaaggaataaatatagtgataatttg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tgggggtatcctgcacttggaagaagaagtagaaaaaggaataaatatagtgataatttg 177
Query: 508 attcttcgtcgccgtactaag 528
|||||||||||||||||||||
Sbjct: 178 attcttcgtcgccgtactaag 198
>gi|268520487|gb|FM890335.1|FM890335 FM890335 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004171,
mRNA sequence
Length = 493
Score = 240 bits (121), Expect = 1e-63
Identities = 148/158 (93%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 371 ttatgaaccctgtagaccatccccatgggggtggtgaagggagggccccaattggtagnn 430
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 3 ttatggaccctgtagaccatccccatgggggtagt-aagggagggccccaattggtagaa 61
Query: 431 nnnnncccgcaaccccttgggggtatcctgcacttggaagaagaagtagaaaaaggaata 490
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aaaaacccgcaaccccttgggggtatcctgcacttggaagaagaagtagaaaaaggaata 121
Query: 491 aatatagtgataatttgattcttcgtcgccgtactaag 528
||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aatatagtgataatttgattcttcgtcgccgtactaag 159
>gi|268519262|gb|FM887729.1|FM887729 FM887729 Jatropha curcas
embryo 35-55 (DAF) Jatropha curcas cDNA clone
rjcfea0_000983, mRNA sequence
Length = 510
Score = 182 bits (92), Expect = 3e-46
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 atatcatcatctacacccagaaagccgtatgctttggaagaagcttgtacagtttgggaa 33
Query: 61 gaggttttgattgatcaaaaagaagaatctac 92
||||||||||||||||||||||||||||||||
Sbjct: 32 gaggttttgattgatcaaaaagaagaatctac 1