Jatropha Genome Database
- JcCA0000051.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0000051.30 + phase: 2 /pseudo/partial
(1087 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268520208|gb|FM890056.1|FM890056 FM890056 Jatropha curcas emb... 957 0.0
gi|268519212|gb|FM887679.1|FM887679 FM887679 Jatropha curcas emb... 918 0.0
gi|268520813|gb|FM889571.1|FM889571 FM889571 Jatropha curcas emb... 839 0.0
gi|268518640|gb|FM888883.1|FM888883 FM888883 Jatropha curcas emb... 309 4e-84
>gi|268520208|gb|FM890056.1|FM890056 FM890056 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003846,
mRNA sequence
Length = 491
Score = 957 bits (483), Expect = 0.0
Identities = 489/491 (99%)
Strand = Plus / Plus
Query: 568 gacaaatcattcacagagatgtgaagccctgcaatataatgcttgatgcagatttcaatg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacaaatcattcacagagatgtgaagccctgcaatataatgcttgatgcagatttcaatg 60
Query: 628 cggggattttggtccggaatatttttattctggtgttccaactgtgaagactgatgtgta 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggggattttggtccggaatatttttattctggtgttccaactgtgaagactgatgtgta 120
Query: 688 cagctttggggtagtggtgttagaagtgggaactgggaggaagccttttgaagatgacag 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagctttggggtagtggtgttagaagtgggaactgggaggaagccttttgaagatgacag 180
Query: 748 aactgtggttgttgattatgtgtggaacttgtgggaaaagaagaaactaattgaggctgc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aactgtggttgttgattatgtgtggaacttgtgggaaaagaagaaactaattgaggctgc 240
Query: 808 tgatccaaggttgatggggaagtttgatgcactagagatggggaggatgctcatgctggg 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgatccaaggttgatggggaagtttgatgcactagagatggggaggatgctcatgctggg 300
Query: 868 gcttctttgtgtgcacccagactatgagaagaggccaagagtaagagatgcagctaggat 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcttctttgtgtgcacccagactatgagaagaggccaagagtaagagatgcagctaggat 360
Query: 928 tcttaagggagaagcaccactaccatcgttgccagccagtaaaccaagggtgaggattag 987
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 361 tcttaagggagaagcaccactaccatcgttgccagccagtaaaccaatggtgaggattag 420
Query: 988 gcctgttttgccaaatgatacagagaaaatactgaatgttgttggagatcgacccaatat 1047
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 421 gcctgttttgccaaatgatacagagaaaatactgaatgttgtaggagatcgacccaatat 480
Query: 1048 tgatgatgctc 1058
|||||||||||
Sbjct: 481 tgatgatgctc 491
>gi|268519212|gb|FM887679.1|FM887679 FM887679 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000925,
mRNA sequence
Length = 503
Score = 918 bits (463), Expect = 0.0
Identities = 493/504 (97%), Gaps = 1/504 (0%)
Strand = Plus / Plus
Query: 393 ggggactgagttagttctggttttttagttcctacccaatcaatgggagcctcnnnnnnn 452
||||||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct: 1 ggggactgagttagttcatggttttta-ttcctacccaatcaatgggagcctcaaaaaaa 59
Query: 453 tgatgcattttagcttaaattctgcagttgtcctgtcatggaagcagtttttgaatataa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tgatgcattttagcttaaattctgcagttgtcctgtcatggaagcagtttttgaatataa 119
Query: 513 aataaaatttggggggttgcttctgctcttacgtatcgtcacgaagaatgcaagagacaa 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aataaaatttggggggttgcttctgctcttacgtatcgtcacgaagaatgcaagagacaa 179
Query: 573 atcattcacagagatgtgaagccctgcaatataatgcttgatgcagatttcaatgcgggg 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atcattcacagagatgtgaagccctgcaatataatgcttgatgcagatttcaatgcgggg 239
Query: 633 attttggtccggaatatttttattctggtgttccaactgtgaagactgatgtgtacagct 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 attttggtccggaatatttttattctggtgttccaactgtgaagactgatgtgtacagct 299
Query: 693 ttggggtagtggtgttagaagtgggaactgggaggaagccttttgaagatgacagaactg 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttggggtagtggtgttagaagtgggaactgggaggaagccttttgaagatgacagaactg 359
Query: 753 tggttgttgattatgtgtggaacttgtgggaaaagaagaaactaattgaggctgctgatc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tggttgttgattatgtgtggaacttgtgggaaaagaagaaactaattgaggctgctgatc 419
Query: 813 caaggttgatggggaagtttgatgcactagagatggggaggatgctcatgctggggcttc 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 caaggttgatggggaagtttgatgcactagagatggggaggatgctcatgctggggcttc 479
Query: 873 tttgtgtgcacccagactatgaga 896
||||||||||||||||||||||||
Sbjct: 480 tttgtgtgcacccagactatgaga 503
>gi|268520813|gb|FM889571.1|FM889571 FM889571 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003261,
mRNA sequence
Length = 648
Score = 839 bits (423), Expect = 0.0
Identities = 423/423 (100%)
Strand = Plus / Plus
Query: 665 ccaactgtgaagactgatgtgtacagctttggggtagtggtgttagaagtgggaactggg 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaactgtgaagactgatgtgtacagctttggggtagtggtgttagaagtgggaactggg 60
Query: 725 aggaagccttttgaagatgacagaactgtggttgttgattatgtgtggaacttgtgggaa 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggaagccttttgaagatgacagaactgtggttgttgattatgtgtggaacttgtgggaa 120
Query: 785 aagaagaaactaattgaggctgctgatccaaggttgatggggaagtttgatgcactagag 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagaagaaactaattgaggctgctgatccaaggttgatggggaagtttgatgcactagag 180
Query: 845 atggggaggatgctcatgctggggcttctttgtgtgcacccagactatgagaagaggcca 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atggggaggatgctcatgctggggcttctttgtgtgcacccagactatgagaagaggcca 240
Query: 905 agagtaagagatgcagctaggattcttaagggagaagcaccactaccatcgttgccagcc 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agagtaagagatgcagctaggattcttaagggagaagcaccactaccatcgttgccagcc 300
Query: 965 agtaaaccaagggtgaggattaggcctgttttgccaaatgatacagagaaaatactgaat 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtaaaccaagggtgaggattaggcctgttttgccaaatgatacagagaaaatactgaat 360
Query: 1025 gttgttggagatcgacccaatattgatgatgctccatatttgacccataggatccagttt 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttgttggagatcgacccaatattgatgatgctccatatttgacccataggatccagttt 420
Query: 1085 aac 1087
|||
Sbjct: 421 aac 423
>gi|268518640|gb|FM888883.1|FM888883 FM888883 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002390,
mRNA sequence
Length = 468
Score = 309 bits (156), Expect = 4e-84
Identities = 172/176 (97%), Gaps = 1/176 (0%)
Strand = Plus / Plus
Query: 912 gagatgcagctaggattcttaagggagaagcaccactaccatcgttgccagccagtaaac 971
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagatgcagctaagattcttaagggagaagcaccactaccatcgttgccagccagtaaac 60
Query: 972 caagggtgaggattaggcctgttttgccaaatgatacagagaaaatactgaatgttgttg 1031
|| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ca-gggtgaggattaagcctattttgccaaatgatacagagaaaatactgaatgttgttg 119
Query: 1032 gagatcgacccaatattgatgatgctccatatttgacccataggatccagtttaac 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gagatcgacccaatattgatgatgctccatatttgacccataggatccagtttaac 175