Jatropha Genome Database

JcCA0000041.60
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0000041.60 + phase: 0 /partial
         (564 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518740|gb|FM888983.1|FM888983 FM888983 Jatropha curcas emb...   589   e-168

>gi|268518740|gb|FM888983.1|FM888983 FM888983 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002526,
           mRNA sequence
          Length = 532

 Score =  589 bits (297), Expect = e-168
 Identities = 327/342 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaaagaaaagcatttattccccttctatatcttacatctatagtttttttgccctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atgaaaagaaaagcatttattccccttctatatcttacatctatagtttttttgccctgg 283

                                                                       
Query: 61  tggatctcnnnnnnnnnnnnnnnatttaataaaagttttgaatcttgggttattaattgg 120
           ||||||||               |||||||||||||||||||||||||||||||||||||
Sbjct: 282 tggatctcttttttttcttttttatttaataaaagttttgaatcttgggttattaattgg 223

                                                                       
Query: 121 tgtaatactagtaaatccgaaacttttttaaatgatatccaagaaaaaagtattctagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tgtaatactagtaaatccgaaacttttttaaatgatatccaagaaaaaagtattctagaa 163

                                                                       
Query: 181 aaattcatagaattagaggaactcgttcgcttggacgaaatgataaaggaatacccggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aaattcatagaattagaggaactcgttcgcttggacgaaatgataaaggaatacccggaa 103

                                                                       
Query: 241 acacatctacaagggtttcgtaccggaatccacaaagaaacgatccaattgatcaagatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 acacatctacaagggtttcgtaccggaatccacaaagaaacgatccaattgatcaagatg 43

                                                     
Query: 301 cacaatgaagatcgtatccatacgattttacacttctcgaca 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  cacaatgaagatcgtatccatacgattttacacttctcgaca 1