Jatropha Genome Database
- JcCA0000041.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0000041.30 + phase: 0
(1482 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|262090636|gb|GT228994.1|GT228994 JC559 Jatropha seeds from fr... 898 0.0
gi|268519632|gb|FM888099.1|FM888099 FM888099 Jatropha curcas emb... 490 e-138
>gi|262090636|gb|GT228994.1|GT228994 JC559 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
PL12SE.A02.scf 5', mRNA sequence
Length = 635
Score = 898 bits (453), Expect = 0.0
Identities = 462/465 (99%)
Strand = Plus / Plus
Query: 1018 ggggaaaaaatcacccgtttgattgagtatgctaccaataaatttttacctcttatttta 1077
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 56 ggggaaaaaatcacccgtttgactgagtatgctaccaataaatttttacctcttatttta 115
Query: 1078 gtgtgtgcttccggaggagcacgcatgcaagaaggaagtttgagcttgatgcaaatggct 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 gtgtgtgcttccggaggagcacgcatgcaagaaggaagtttgagcttgatgcaaatggct 175
Query: 1138 aaaatatcttctgctttatatgattatcaatcgaataaaaagttattttatgtatcaatc 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 aaaatatcttctgctttatatgattatcaatcgaataaaaagttattttatgtatcaatc 235
Query: 1198 cttacatctcctacgaccggcggggtgacagctagttttggtatgttgggggatatcatt 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 cttacatctcctacgaccggcggggtgacagctagttttggtatgttgggggatatcatt 295
Query: 1258 attgctgaacctaacgcctatattgcatttgcgggtaaaagagtaattgaacaaacattg 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 attgctgaacctaacgcctatattgcatttgcgggtaaaagagtaattgaacaaacattg 355
Query: 1318 aataagacagtacctgaaggttcacaatcggctgaatttttattccataagggtttattc 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aataagacagtacctgaaggttcacaatcggctgaatttttattccataagggtttattc 415
Query: 1378 gatccaatcgtaccacgtaatcctttaaaaggcgttttgaatgagttacttcagcttcac 1437
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 416 gatctaatcgtaccacgtaatcttttaaaaggcgttttgaatgagttacttcagcttcac 475
Query: 1438 gatttctttcctttgaatcataaatcaagtagagccttaagttaa 1482
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gatttctttcctttgaatcataaatcaagtagagccttaagttaa 520
>gi|268519632|gb|FM888099.1|FM888099 FM888099 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001433,
mRNA sequence
Length = 534
Score = 490 bits (247), Expect = e-138
Identities = 274/279 (98%), Gaps = 3/279 (1%)
Strand = Plus / Plus
Query: 1206 tcctacgaccggcggggtgacagctagttttggtatgttggggg-atatcattattgctg 1264
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 5 tcctacgaccggcggggtgacagctagttttggtatgttgggggcata-cattattgctg 63
Query: 1265 aacctaacgcctatattgcatttgcgggtaaaagagtaattgaacaaacattgaataaga 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aacctaacgcctatattgcatttgcgggtaaaagagtaattgaacaaacattgaataaga 123
Query: 1325 cagtacctg-aaggttcacaatcggctgaatttttattccataagggtttattcgatcca 1383
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 124 cagtacctgnaaggttcacaatcggctgaatttttattccataagggtttattcgatcta 183
Query: 1384 atcgtaccacgtaatcctttaaaaggcgttttgaatgagttacttcagcttcacgatttc 1443
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atcgtaccacgtaatcttttaaaaggcgttttgaatgagttacttcagcttcacgatttc 243
Query: 1444 tttcctttgaatcataaatcaagtagagccttaagttaa 1482
|||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttcctttgaatcataaatcaagtagagccttaagttaa 282