Jatropha Genome Database

JcCA0000041.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0000041.20 - phase: 2 /pseudo/partial
         (250 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520424|gb|FM890272.1|FM890272 FM890272 Jatropha curcas emb...   392   e-110

>gi|268520424|gb|FM890272.1|FM890272 FM890272 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004091,
           mRNA sequence
          Length = 497

 Score =  392 bits (198), Expect = e-110
 Identities = 233/250 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattggaccaaattcatatcgagaaaggtagtatttcttttttcctaaaaatgtgnnnn 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 235 atattggaccaaattcatatcgagaaaggtagtatttcttttttcctaaaaatgtgaaaa 294

                                                                       
Query: 61  nnnnncannnnnnngtaaaatctcgtctattaataaatttctattccaacacggaacgaa 120
                ||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaaaacatttttttgtaaaatctcgtctattaataaatttctattccaacacggaacgaa 354

                                                                       
Query: 121 aagggcaatatacaggatgggtagaagaagttgtgatattgggctcgacccacgacccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aagggcaatatacaggatgggtagaagaagttgtgatattgggctcgacccacgacccga 414

                                                                       
Query: 181 aattagggaatataaaagaatacaccaatcctatagatccttaggattaattgtggatcc 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 415 aattagggaatataaaagaatacaccaatcctatagatccttaggattcattgtggatcc 474

                     
Query: 241 aagataacaa 250
           ||||||||||
Sbjct: 475 aagataacaa 484