Jatropha Genome Database

JcCA0000041.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0000041.10 + phase: 0 /partial
         (501 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522481|gb|FM894626.1|FM894626 FM894626 Jatropha curcas emb...   906   0.0  

>gi|268522481|gb|FM894626.1|FM894626 FM894626 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000433,
           mRNA sequence
          Length = 535

 Score =  906 bits (457), Expect = 0.0
 Identities = 467/469 (99%), Gaps = 1/469 (0%)
 Strand = Plus / Plus

                                                                       
Query: 33  tttgtctggtggagatcatattcacgctggtaccgtagtaggtaaacttgaaggggaaag 92
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1   tttgtctggtggagatcatattcacgctggtaccgtagtag-taaacttgaaggggaaag 59

                                                                       
Query: 93  agacatcactttgggctttgttgatttactgcgtgatgattttattgaaaaagatcgaag 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  agacatcactttgggctttgttgatttactgcgtgatgattttattgaaaaagatcgaag 119

                                                                       
Query: 153 ccgcggtatttatttcactcaagattgggtctctctaccgggtgttttgcctgtagcttc 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ccgcggtatttatttcactcaagattgggtctctctaccgggtgttttgcctgtagcttc 179

                                                                       
Query: 213 aggaggtattcacgtttggcatatgcctgctctgaccgagatctttggagatgattccgt 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aggaggtattcacgtttggcatatgcctgctctgaccgagatctttggagatgattccgt 239

                                                                       
Query: 273 actacaattcggtggaggaactttagggcacccttggggaaatgcacctggtgccgtagc 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 actacaattcggtggaggaactttagggcacccttggggaaatgcacctggtgccgtagc 299

                                                                       
Query: 333 taatcgagtagctctagaagcatgtgtacaagctcgtaatgaaggacgtgatcttgctcg 392
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 300 taatcgagtagctctagaagcatgtgtacaagctcgtaatgaaggccgtgatcttgctcg 359

                                                                       
Query: 393 tgagggtaatgaaattatccgtgaggctagcaaatggagtcctgaactagctgctgcttg 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgagggtaatgaaattatccgtgaggctagcaaatggagtcctgaactagctgctgcttg 419

                                                            
Query: 453 tgaagtatggaaggagattaaatttgaattccaagcgatggatactttg 501
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgaagtatggaaggagattaaatttgaattccaagcgatggatactttg 468