Jatropha Genome Database

JcCA0000015.50
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0000015.50 - phase: 0 /TE
         (2872 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520299|gb|FM890147.1|FM890147 FM890147 Jatropha curcas emb...   180   6e-45

>gi|268520299|gb|FM890147.1|FM890147 FM890147 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003948,
            mRNA sequence
          Length = 571

 Score =  180 bits (91), Expect = 6e-45
 Identities = 158/179 (88%), Gaps = 1/179 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1373 gagggaagatgagatggttgagttgggaaaggctgtgtgtagcgaaggaagaatgaggtt 1432
            |||| ||||||||||||||||||| ||||||||| ||||| |||| ||||||| ||||||
Sbjct: 182  gaggaaagatgagatggttgagttaggaaaggctatgtgtggcgagggaagaaggaggtt 123

                                                                        
Query: 1433 tgggttttagacatttgcgaagcttcaatctggccttgttaggaaagcgctattggaggt 1492
            ||||||| ||||||||| |||| |||| ||| | | |||||||||||| || ||||||  
Sbjct: 122  tgggtttcagacatttgagaagtttcattctagtcatgttaggaaagcactgttggagac 63

                                                                       
Query: 1493 ttttacataatacaaactctctcttttatagctctttcaaatctaaatatttcccaagt 1551
            ||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 62   ttttacataatac-aattctctcttttatagttctttcaaatctaaatattttccaagt 5