Jatropha Genome Database

JcSR152930r.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcSR152930r.10 + phase: 2 /TE/partial
         (124 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g17970.1                                                        63   6e-11
Glyma18g14690.1                                                        59   1e-09
Glyma01g03440.1                                                        58   2e-09
Glyma17g29280.1                                                        56   9e-09
Glyma01g24910.1                                                        55   2e-08

>Glyma06g17970.1 
          Length = 270

 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 60/106 (56%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D +G+F+KA +  ++G+ +PR AE  A+ + ++W   L +   I E DC  +V+ +    
Sbjct: 165 DEKGNFLKAFTATTTGVPTPREAEAWALHQAINWTHHLGMQNVIFELDCKLVVDNMVNNK 224

Query: 61  LDYSDWSLVLGDIKHFISQSSDISIAWVKRHANQPAHSLARAACYF 106
              +++  +L   +  +S S +  +++ KR AN   H+LARA+ ++
Sbjct: 225 KGSTEFHAILHRCRAILSNSPNSRMSFEKRQANLITHNLARASRFY 270


>Glyma18g14690.1 
          Length = 278

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 2/115 (1%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D +G F++A      G+      E + + + L+WL+++      +E+DC +L +++    
Sbjct: 165 DDKGWFVRATMNIRHGMPEVHEGEALVLLQTLTWLKNMDYQYVEVESDCKRLTDSLDRNI 224

Query: 61  LDYSDWSLVLGDIKHFISQSSDISIAWVKRHANQPAHSLARAACYFASFCVWDMI 115
           +D S++ ++L   K  +    +  ++ +++ AN  AHSLARA+  +     W MI
Sbjct: 225 MDDSEFGMILNKCKRILMSFPNHKVSLIRKQANCIAHSLARASKLYVG--PWSMI 277


>Glyma01g03440.1 
          Length = 430

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           +  G F  A + +  G  +P+ AE +A    L+ ++   LG  +IETDC  + +A +   
Sbjct: 325 EEEGMFAVAATSWFHGQPTPQEAEAVAFLFALNGIKEQQLGNIVIETDCKAISDAFKAQQ 384

Query: 61  LDYSDWSLVLGDIKHFISQSSDISIAWVKRHANQPAHSLARAA 103
            D  +   +L      IS   + SI +V + ANQ AHSLARA+
Sbjct: 385 FDNFEAGCILKICNTQISDIHNCSIQFVSKQANQVAHSLARAS 427


>Glyma17g29280.1 
          Length = 865

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 1   DHRGSFIKAVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGS 60
           D  G+F+KA +  S  +  P  AE  A+++ L W++SLHL   ++ETDC  + + +    
Sbjct: 297 DDNGTFVKARTASSMSIPKPDEAEAFALKKSLEWIQSLHLQNVVVETDCKLVTDHIDSRQ 356

Query: 61  LDYSDWSLVLGDIKHFISQSSDISIAWVKRHANQPAHSLARAACYFASFC 110
              SD+ L+L ++   IS    +        +N+     A     FAS+C
Sbjct: 357 KGLSDFILILANL---ISLGLQVRAVLGISRSNEGFLDCASGVVTFASWC 403


>Glyma01g24910.1 
          Length = 342

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 51/95 (53%)

Query: 9   AVSGYSSGLCSPRVAETIAMREVLSWLRSLHLGLTIIETDCLQLVNAVQGGSLDYSDWSL 68
           A + YS+G   PR  +   + + ++W+  L +   I E DC  ++ A+      Y D+  
Sbjct: 247 AKTFYSNGFPDPRTTKAWGLLQAMNWMVDLCMENVIFEVDCEAILKAILKPIKGYLDFHY 306

Query: 69  VLGDIKHFISQSSDISIAWVKRHANQPAHSLARAA 103
           ++   K ++S  ++  +++ ++  NQ AH+LARA+
Sbjct: 307 IISKCKDYLSNHTNSLVSFKRKQTNQVAHTLARAS 341