Jatropha Genome Database

JcPR03EVQAR.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03EVQAR.10 + phase: 0 /partial/short
         (46 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g42560.1                                                        62   1e-10
Glyma20g24470.1                                                        62   1e-10

>Glyma10g42560.1 
          Length = 1266

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF+EWTH V+SS T+D++ HF+LLGVVEALAAIFK
Sbjct: 241 FTSFVEWTHTVMSSVTEDLLHHFQLLGVVEALAAIFK 277


>Glyma20g24470.1 
          Length = 1289

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF+EWTH V+SS T+D++ HF+LLGVVEALAAIFK
Sbjct: 232 FTSFVEWTHTVMSSVTEDLLHHFQLLGVVEALAAIFK 268