Jatropha Genome Database

JcPR03AM69T.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03AM69T.10 + phase: 2 /pseudo/partial
         (61 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g37710.2                                                        53   6e-08
Glyma02g37710.1                                                        50   5e-07
Glyma14g36000.1                                                        49   2e-06

>Glyma02g37710.2 
          Length = 257

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 28/37 (75%)

Query: 1   FIEKWVATADIAKLRTEADASGLSFDQQCKYCEKVCL 37
           FI KWVA   +AK RT+A  + LSFDQQCK+CEKV +
Sbjct: 220 FIHKWVANGKLAKQRTKAATAHLSFDQQCKFCEKVSI 256


>Glyma02g37710.1 
          Length = 319

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)

Query: 1   FIEKWVATADIAKLRTEADASGLSFDQQCKYCEK 34
           FI KWVA   +AK RT+A  + LSFDQQCK+CEK
Sbjct: 220 FIHKWVANGKLAKQRTKAATAHLSFDQQCKFCEK 253


>Glyma14g36000.1 
          Length = 244

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 25/34 (73%)

Query: 1   FIEKWVATADIAKLRTEADASGLSFDQQCKYCEK 34
           F  KWVA   +AK RT+A  + LSFDQQCK+CEK
Sbjct: 142 FTHKWVANGKLAKQRTKAATAHLSFDQQCKFCEK 175