Jatropha Genome Database

JcPR02JBVLC.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02JBVLC.10 - phase: 2 /pseudo/partial
         (55 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g19320.1                                                        58   3e-09
Glyma13g21030.1                                                        56   9e-09
Glyma17g09700.1                                                        49   2e-06

>Glyma06g19320.1 
          Length = 779

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 28/39 (71%)

Query: 1   LMEEPAAYGKLGLANXXXXXXXXXXXFQFVDAYRSIKQR 39
           LMEEP+AYGKLGLAN           FQFVDAYRSIKQR
Sbjct: 496 LMEEPSAYGKLGLANLLEMREECLREFQFVDAYRSIKQR 534


>Glyma13g21030.1 
          Length = 940

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 30/44 (68%)

Query: 1   LMEEPAAYGKLGLANXXXXXXXXXXXFQFVDAYRSIKQRXSQFS 44
           LMEEP+AYGKLGLAN           FQF DAYRSIKQR ++ S
Sbjct: 639 LMEEPSAYGKLGLANLLEMREECLREFQFADAYRSIKQRENEAS 682


>Glyma17g09700.1 
          Length = 910

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 27/44 (61%)

Query: 1   LMEEPAAYGKLGLANXXXXXXXXXXXFQFVDAYRSIKQRXSQFS 44
           LMEEPAAYGKLGLA            F F DAY SIKQR ++ S
Sbjct: 603 LMEEPAAYGKLGLARLLEMREECLREFHFFDAYISIKQRENEAS 646