Jatropha Genome Database

JcPR02FRRM3.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02FRRM3.10 - phase: 1 /pseudo/partial
         (56 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g03490.2                                                        68   3e-12
Glyma04g03490.1                                                        65   2e-11
Glyma19g02030.1                                                        64   5e-11

>Glyma04g03490.2 
          Length = 487

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/30 (93%), Positives = 29/30 (96%)

Query: 4   VSTNLSLVEKFGIDPNNAFAFWDWVGGRYS 33
           VSTNL+LVEKFGIDP NAFAFWDWVGGRYS
Sbjct: 247 VSTNLTLVEKFGIDPKNAFAFWDWVGGRYS 276


>Glyma04g03490.1 
          Length = 568

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/30 (93%), Positives = 29/30 (96%)

Query: 4   VSTNLSLVEKFGIDPNNAFAFWDWVGGRYS 33
           VSTNL+LVEKFGIDP NAFAFWDWVGGRYS
Sbjct: 247 VSTNLTLVEKFGIDPKNAFAFWDWVGGRYS 276


>Glyma19g02030.1 
          Length = 911

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/30 (90%), Positives = 29/30 (96%)

Query: 4   VSTNLSLVEKFGIDPNNAFAFWDWVGGRYS 33
           VSTNL+LVE+FGIDPNN FAFWDWVGGRYS
Sbjct: 273 VSTNLTLVEEFGIDPNNVFAFWDWVGGRYS 302