Jatropha Genome Database

JcPR01C6D2I.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR01C6D2I.10 + phase: 0 /pseudo/partial
         (103 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g02510.2                                                        93   8e-20
Glyma12g02510.1                                                        93   8e-20
Glyma11g10190.1                                                        93   8e-20
Glyma11g27450.1                                                        77   6e-15

>Glyma12g02510.2 
          Length = 490

 Score = 92.8 bits (229), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/44 (93%), Positives = 43/44 (97%)

Query: 31  VICAFGRLGTMFGCDKYNIKPDLVSVAKALSSAYLPIGGVMVSP 74
           VICAFGRLGTMFGCDKYNIKPDLVS+AKALSSAYLPIG V+VSP
Sbjct: 254 VICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLVSP 297


>Glyma12g02510.1 
          Length = 513

 Score = 92.8 bits (229), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/44 (93%), Positives = 43/44 (97%)

Query: 31  VICAFGRLGTMFGCDKYNIKPDLVSVAKALSSAYLPIGGVMVSP 74
           VICAFGRLGTMFGCDKYNIKPDLVS+AKALSSAYLPIG V+VSP
Sbjct: 311 VICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLVSP 354


>Glyma11g10190.1 
          Length = 513

 Score = 92.8 bits (229), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/44 (93%), Positives = 43/44 (97%)

Query: 31  VICAFGRLGTMFGCDKYNIKPDLVSVAKALSSAYLPIGGVMVSP 74
           VICAFGRLGTMFGCDKYNIKPDLVS+AKALSSAYLPIG V+VSP
Sbjct: 311 VICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLVSP 354


>Glyma11g27450.1 
          Length = 192

 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 8/65 (12%)

Query: 14  SPILATEACFLYF*LL*VICAFGRL-GTMFGCDKYNIKPDLVSVAKALSSAYLPIGGVMV 72
            P++ ++ C        V+   G L GTMFGCDKYNIKPDLVS+AKALSSAYLPIG V+V
Sbjct: 57  KPVIHSDTCK-------VVSTTGTLIGTMFGCDKYNIKPDLVSLAKALSSAYLPIGAVLV 109

Query: 73  SPRSF 77
           SP+ F
Sbjct: 110 SPKIF 114