Jatropha Genome Database

JcCD0162764.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0162764.10 + phase: 1 /partial/short
         (47 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g34600.1                                                        85   2e-17
Glyma13g01920.1                                                        84   5e-17
Glyma08g07840.1                                                        72   1e-13
Glyma05g24610.1                                                        72   1e-13
Glyma07g33830.1                                                        67   4e-12
Glyma09g17110.1                                                        65   1e-11
Glyma06g29690.1                                                        64   4e-11
Glyma10g16080.1                                                        59   1e-09
Glyma17g03530.1                                                        59   2e-09

>Glyma14g34600.1 
          Length = 386

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/47 (82%), Positives = 44/47 (93%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M+ +MSKLR+LDAYPKINEDFYSRT SGGVIT+ASSI+MLLLF SEL
Sbjct: 1  MDSIMSKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFFSEL 47


>Glyma13g01920.1 
          Length = 386

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/47 (82%), Positives = 44/47 (93%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          ME ++SKLR+LDAYPKINEDFYSRT SGGVIT+ASSI+MLLLF SEL
Sbjct: 1  MESIISKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFYSEL 47


>Glyma08g07840.1 
          Length = 384

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 40/47 (85%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M+ + +KLR+LDAYPK+NEDFY+RT +GGV+T+ S+ VML LF SEL
Sbjct: 1  MDKVFNKLRNLDAYPKVNEDFYNRTLAGGVVTVVSAAVMLFLFFSEL 47


>Glyma05g24610.1 
          Length = 384

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 40/47 (85%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M+ + +KLR+LDAYPK+NEDFY+RT +GGV+T+ S+ VML LF SEL
Sbjct: 1  MDKVFNKLRNLDAYPKVNEDFYNRTLAGGVVTVVSAAVMLFLFFSEL 47


>Glyma07g33830.1 
          Length = 44

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 5  MSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          MSKLR+LD YPKINEDF++ +  GGVIT+ASSI+M LLF SEL
Sbjct: 1  MSKLRNLDVYPKINEDFFNHSLYGGVITLASSILMFLLFYSEL 43


>Glyma09g17110.1 
          Length = 70

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 39/47 (82%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M+ +MSKL +LD YPKIN DF++ +  GGVIT+ASSI+MLLLF SEL
Sbjct: 1  MDSIMSKLYNLDVYPKINGDFFNHSLYGGVITLASSILMLLLFYSEL 47


>Glyma06g29690.1 
          Length = 48

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 38/47 (80%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M+ +MSKL +LD YPKINEDF++R+  G VIT+ASSI+M L F SEL
Sbjct: 1  MDSIMSKLHNLDMYPKINEDFFNRSLYGDVITLASSILMFLPFYSEL 47


>Glyma10g16080.1 
          Length = 112

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M+ +MSKL +LD YP+INEDF++ +  G VIT+ SSI+M LLF SEL
Sbjct: 1  MDNIMSKLFNLDVYPEINEDFFNLSLYGSVITLVSSILMFLLFYSEL 47


>Glyma17g03530.1 
          Length = 48

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          M+ +MSK  +LD YPKINED ++R+  G +IT+ASSI+M LLF S+L
Sbjct: 1  MDSIMSKFCNLDVYPKINEDSFNRSLYGDIITLASSILMFLLFYSKL 47