Jatropha Genome Database

JcCD0135314.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0135314.10 - phase: 0 /pseudo/partial
         (73 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g16980.1                                                        60   7e-10
Glyma09g05690.1                                                        59   8e-10

>Glyma15g16980.1 
          Length = 330

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 13  ISFWVEANLYFQFVSFLCCFPFTQMAGQVKCHKYSRRRPSEGWNFTVEKM 62
           IS   +  LY +FV  +  F   +MAG+VKCHKYSRRRPS+GW FTVEK+
Sbjct: 236 ISMKEDEMLYREFVEKMN-FNKKKMAGEVKCHKYSRRRPSDGWTFTVEKL 284


>Glyma09g05690.1 
          Length = 329

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 33/42 (78%), Gaps = 1/42 (2%)

Query: 21  LYFQFVSFLCCFPFTQMAGQVKCHKYSRRRPSEGWNFTVEKM 62
           LY +FV  +  F   +MAG+VKCHKYSRRRPS+GW FTVEK+
Sbjct: 243 LYREFVEKMN-FNKKKMAGEVKCHKYSRRRPSDGWTFTVEKL 283