Jatropha Genome Database

JcCD0108263.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0108263.10 - phase: 2 /pseudo/partial
         (108 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g32940.1                                                       106   4e-24
Glyma15g06380.1                                                       106   7e-24
Glyma08g07160.1                                                        99   8e-22
Glyma07g30150.1                                                        99   1e-21
Glyma04g16340.2                                                        89   9e-19
Glyma04g16340.1                                                        89   1e-18

>Glyma13g32940.1 
          Length = 826

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSR-AVPLSLRQKDGAEPDKAPASERTLKS 61
           I ++MDYINTSHPNFIGGSKA+EIA QQ KSSR A+P+S RQKD  E DK  ASER++KS
Sbjct: 499 IEMEMDYINTSHPNFIGGSKALEIAAQQTKSSRVAIPVS-RQKDALESDKGSASERSVKS 557

Query: 62  RAILARQVNGVVAD 75
           RAILARQ NGVV D
Sbjct: 558 RAILARQANGVVTD 571


>Glyma15g06380.1 
          Length = 825

 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 2/74 (2%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSR-AVPLSLRQKDGAEPDKAPASERTLKS 61
           I ++MDYINTSHPNFIGGSKA+EIA QQ KSSR A+P+S RQKD  E DK  ASER++KS
Sbjct: 498 IEMEMDYINTSHPNFIGGSKALEIAAQQTKSSRVAIPVS-RQKDALESDKGSASERSVKS 556

Query: 62  RAILARQVNGVVAD 75
           RAILARQ NGVV D
Sbjct: 557 RAILARQANGVVPD 570


>Glyma08g07160.1 
          Length = 814

 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 60/74 (81%), Gaps = 2/74 (2%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSR-AVPLSLRQKDGAEPDKAPASERTLKS 61
           I ++MDYINTSHPNFIGGSKA+E A+QQ +SSR  +P+S R KD  E DK PA+ER+ KS
Sbjct: 488 IEMEMDYINTSHPNFIGGSKAIEAAVQQTRSSRVGLPVS-RVKDALESDKGPATERSGKS 546

Query: 62  RAILARQVNGVVAD 75
           R+ILAR  NGVVAD
Sbjct: 547 RSILARHANGVVAD 560


>Glyma07g30150.1 
          Length = 647

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 60/74 (81%), Gaps = 2/74 (2%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSR-AVPLSLRQKDGAEPDKAPASERTLKS 61
           I ++MDYINTSHPNFIGGSKA+E A+QQ +SSR A+P+S R KD  E DK  ASER+ KS
Sbjct: 323 IEMEMDYINTSHPNFIGGSKAIEAAVQQTRSSRIALPVS-RVKDALESDKGSASERSGKS 381

Query: 62  RAILARQVNGVVAD 75
           R+ILAR  NGVVAD
Sbjct: 382 RSILARHANGVVAD 395


>Glyma04g16340.2 
          Length = 744

 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 59/74 (79%), Gaps = 2/74 (2%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSR-AVPLSLRQKDGAEPDKAPASERTLKS 61
           I ++++YINTSH NFIGGSKA+EIA QQ KSS  ++P+S RQK+  E DK   SER++KS
Sbjct: 500 IAMELNYINTSHHNFIGGSKALEIASQQTKSSMVSIPVS-RQKEVLESDKGSVSERSVKS 558

Query: 62  RAILARQVNGVVAD 75
           RAILARQ NGVV +
Sbjct: 559 RAILARQANGVVTE 572


>Glyma04g16340.1 
          Length = 819

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 59/74 (79%), Gaps = 2/74 (2%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSR-AVPLSLRQKDGAEPDKAPASERTLKS 61
           I ++++YINTSH NFIGGSKA+EIA QQ KSS  ++P+S RQK+  E DK   SER++KS
Sbjct: 500 IAMELNYINTSHHNFIGGSKALEIASQQTKSSMVSIPVS-RQKEVLESDKGSVSERSVKS 558

Query: 62  RAILARQVNGVVAD 75
           RAILARQ NGVV +
Sbjct: 559 RAILARQANGVVTE 572