Jatropha Genome Database

JcCD0101804.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0101804.10 + phase: 0 /pseudo
         (121 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g45120.1                                                       206   4e-54
Glyma18g07550.1                                                       206   6e-54
Glyma04g10010.1                                                       117   3e-27
Glyma02g47440.1                                                        85   2e-17
Glyma13g10880.1                                                        76   8e-15
Glyma14g01310.1                                                        54   5e-08

>Glyma08g45120.1 
          Length = 266

 Score =  206 bits (524), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 106/107 (99%)

Query: 1   MLELRLVQGSLLKKVLDAIKELVKDANFDCSTTGFSLQAMDSSHVALVSLLLRAEGFEHY 60
           MLELRLVQGSLLKKVL+++KELV DANFDCS+TGFSLQAMDSSHVALV+LLLR+EGFEHY
Sbjct: 1   MLELRLVQGSLLKKVLESVKELVNDANFDCSSTGFSLQAMDSSHVALVALLLRSEGFEHY 60

Query: 61  RCDRNLSMGMNLDNMAKMLKCSGNDDIITIKADDGSDSVTFMFESPS 107
           RCDRN+SMGMNL+NMAKMLKC+GNDDIITIKADDGSD+VTFMFESP+
Sbjct: 61  RCDRNISMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPT 107


>Glyma18g07550.1 
          Length = 266

 Score =  206 bits (523), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 96/107 (89%), Positives = 105/107 (98%)

Query: 1   MLELRLVQGSLLKKVLDAIKELVKDANFDCSTTGFSLQAMDSSHVALVSLLLRAEGFEHY 60
           MLELRLVQGSLLKKVL++IKELV DANFDCS+TGFSLQAMDSSHVALV+LLLR+EGFEHY
Sbjct: 1   MLELRLVQGSLLKKVLESIKELVNDANFDCSSTGFSLQAMDSSHVALVALLLRSEGFEHY 60

Query: 61  RCDRNLSMGMNLDNMAKMLKCSGNDDIITIKADDGSDSVTFMFESPS 107
           RCDRN SMGMNL+NMAKMLKC+GNDDIITIKADDGSD+VTFMFESP+
Sbjct: 61  RCDRNTSMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPA 107


>Glyma04g10010.1 
          Length = 70

 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 64/69 (92%)

Query: 1  MLELRLVQGSLLKKVLDAIKELVKDANFDCSTTGFSLQAMDSSHVALVSLLLRAEGFEHY 60
          MLEL L+QGSLLKKVL++IKELV DANF+CS+ GFSLQAMDS+HVALV+LLLR EGFEHY
Sbjct: 1  MLELHLMQGSLLKKVLESIKELVNDANFNCSSIGFSLQAMDSNHVALVTLLLRFEGFEHY 60

Query: 61 RCDRNLSMG 69
           CDRN+SMG
Sbjct: 61 CCDRNISMG 69


>Glyma02g47440.1 
          Length = 251

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 72/108 (66%), Gaps = 3/108 (2%)

Query: 2   LELRLVQGSLLKKVLDAIKELVKD--ANFDCSTTGFSLQAMDSSHVALVSLLLRAEGFEH 59
           +E+ L + S +K V++AI ELV+   A F  S+ G SL+AMDS   A++ +L+ ++ F H
Sbjct: 1   MEVVLGEASEVKNVVEAI-ELVETGVAKFVFSSRGLSLKAMDSRECAMMEILIPSDAFAH 59

Query: 60  YRCDRNLSMGMNLDNMAKMLKCSGNDDIITIKADDGSDSVTFMFESPS 107
           YRCD   S+G++LD M ++L  + + DI+++ A +G D VTF F+ PS
Sbjct: 60  YRCDNVFSVGLSLDQMLQLLHRAHDSDIVSLTALEGQDHVTFTFQCPS 107


>Glyma13g10880.1 
          Length = 60

 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 47/72 (65%), Gaps = 13/72 (18%)

Query: 23 VKDANFDCSTTGFSLQAMDSSHVALVSLLLRAEGFEHYRCDRNLSMGMNLDNMAKMLKCS 82
          + DANFDCS TGFSL AMDSSH+ LV+LLLR+EGFE Y CD N+ M              
Sbjct: 1  LNDANFDCSFTGFSLLAMDSSHITLVTLLLRSEGFEQYHCDHNIFMDW------------ 48

Query: 83 GNDDIITIKADD 94
           +DDIIT  A+D
Sbjct: 49 -HDDIITSMAND 59


>Glyma14g01310.1 
          Length = 241

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 1  MLELRLVQGSLLKKVLDAIKEL-VKDANFDCSTTGFSLQAMDSSHVALVSLLLRAE 55
          M+E R VQGS+LK +++AI E+ V  ANF+ S  GFSL AMD +  A+  + LR++
Sbjct: 1  MVEARRVQGSVLKHMVEAINEMSVNCANFNFSRAGFSLLAMDPTQTAMAEIFLRSD 56