Jatropha Genome Database

JcCD0092337.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0092337.10 - phase: 0 /pseudo/partial
         (89 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g28120.1                                                        83   8e-17
Glyma10g32130.1                                                        80   4e-16
Glyma20g35490.1                                                        80   5e-16
Glyma11g32860.1                                                        79   1e-15

>Glyma09g28120.1 
          Length = 367

 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 45/52 (86%)

Query: 1   VILAANDLPSINDVTYPELIEIILKLKDGSGQLVGVDASNLLIANSGNDLPV 52
           V+LAANDLPSINDVT  EL+EII KLKD  GQLVGV  SNLLIANSGNDLPV
Sbjct: 244 VVLAANDLPSINDVTCSELVEIISKLKDEDGQLVGVSTSNLLIANSGNDLPV 295


>Glyma10g32130.1 
          Length = 296

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 45/52 (86%)

Query: 1   VILAANDLPSINDVTYPELIEIILKLKDGSGQLVGVDASNLLIANSGNDLPV 52
           VILAAN LPS+NDVTY ELI+II KLKD  G+LVGV  SNLLIANSGNDLPV
Sbjct: 175 VILAANYLPSLNDVTYAELIKIISKLKDEEGRLVGVGTSNLLIANSGNDLPV 226


>Glyma20g35490.1 
          Length = 366

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 45/52 (86%)

Query: 1   VILAANDLPSINDVTYPELIEIILKLKDGSGQLVGVDASNLLIANSGNDLPV 52
           VILAANDLPS+NDVTY EL+EII KLKD  G L+GV  SNL+IANSGNDLPV
Sbjct: 245 VILAANDLPSLNDVTYAELLEIISKLKDEEGCLMGVSTSNLIIANSGNDLPV 296


>Glyma11g32860.1 
          Length = 230

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 44/52 (84%)

Query: 1   VILAANDLPSINDVTYPELIEIILKLKDGSGQLVGVDASNLLIANSGNDLPV 52
           VILAANDLPSINDVTY +LIEII KLKD  G+L GV  SNLLIANS NDLP+
Sbjct: 118 VILAANDLPSINDVTYSDLIEIIPKLKDEEGRLTGVSTSNLLIANSRNDLPL 169