Jatropha Genome Database

JcCD0077184.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0077184.10 + phase: 0 /partial
         (130 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g02290.1                                                       159   6e-40
Glyma04g02230.1                                                       154   2e-38

>Glyma06g02290.1 
          Length = 434

 Score =  159 bits (402), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 94/114 (82%)

Query: 1   SDKQEEAEPFYLIDLGVVIRLMDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCA 60
           +DK +   PF ++DLGVV+ LMDKW   LP V+PFYAVKCN   +L+ +LA LG++FDCA
Sbjct: 52  ADKPDIDSPFSVLDLGVVMGLMDKWACKLPTVQPFYAVKCNPNLSLIGALAALGSSFDCA 111

Query: 61  SQAEIETILGLGVNPDRIVYANPCKSVSHIKYAARVGVNLTTFDSKQEVDKIKN 114
           S+AEIE++L LGV+PDRI+YANPCKS SHI+YAA VGVN+TT+DS  EV+KI+N
Sbjct: 112 SKAEIESVLSLGVSPDRIIYANPCKSESHIRYAASVGVNVTTYDSLDEVEKIRN 165


>Glyma04g02230.1 
          Length = 459

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 93/113 (82%)

Query: 1   SDKQEEAEPFYLIDLGVVIRLMDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCA 60
           +DK +   PF ++DLGVV+ LMD+W   LP V+PFYAVKCN   +L+ +LA LG++FDCA
Sbjct: 77  ADKPDIDTPFSVLDLGVVMGLMDQWACKLPTVQPFYAVKCNPNLSLIGALAALGSSFDCA 136

Query: 61  SQAEIETILGLGVNPDRIVYANPCKSVSHIKYAARVGVNLTTFDSKQEVDKIK 113
           S+AEIE++L LGV+PDRI+YANPCKS SHI+YAA VGVN+TT+DS  EV+KI+
Sbjct: 137 SKAEIESVLSLGVSPDRIIYANPCKSESHIRYAASVGVNVTTYDSIDEVEKIR 189