Jatropha Genome Database

JcCD0075623.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0075623.10 - phase: 2 /partial
         (105 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g07130.1                                                       184   2e-47
Glyma19g05630.1                                                       171   2e-43

>Glyma13g07130.1 
          Length = 502

 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 97/104 (93%)

Query: 1   HVYELGFMEAIAIPQTECFEGAIRFARSEGLIPAPEPTHAIAATIREALHCKETGESKVI 60
           HVY+LG MEAIAIPQTECF+GAI+FARSEGLIPAPEPTHAIAATIREA+ C+E GE+KVI
Sbjct: 398 HVYDLGLMEAIAIPQTECFQGAIQFARSEGLIPAPEPTHAIAATIREAIRCREAGEAKVI 457

Query: 61  LMAMCGHGHFDLTSYEKYLSGNLVDLSFSEDKIQASLSKVPRIM 104
           L AMCGHGHFDL +YEKYL GN+VDLSFSEDK++ASL+ +P+++
Sbjct: 458 LTAMCGHGHFDLPAYEKYLQGNMVDLSFSEDKMKASLANIPQVI 501


>Glyma19g05630.1 
          Length = 241

 Score =  171 bits (432), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 93/102 (91%), Gaps = 1/102 (0%)

Query: 1   HVYELGFMEAIAIPQTECFEGAIRFARSEGLIPAPEPTHAIAATIREALHCKETGESKVI 60
           HV++LG MEAIAIPQTEC  GAI+FARSEGLIPA EPTHAIAATIREA+ C+ETGE+KVI
Sbjct: 141 HVFDLGLMEAIAIPQTECL-GAIQFARSEGLIPASEPTHAIAATIREAIRCRETGEAKVI 199

Query: 61  LMAMCGHGHFDLTSYEKYLSGNLVDLSFSEDKIQASLSKVPR 102
           L AMCGHGHFDL +YEKYL GN+VDLSFSEDK++ASL+ +P+
Sbjct: 200 LTAMCGHGHFDLPAYEKYLQGNMVDLSFSEDKMKASLANIPQ 241