Jatropha Genome Database

JcCD0070253.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0070253.10 - phase: 1 /pseudo/partial
         (190 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g25960.1                                                       212   2e-55
Glyma10g41290.1                                                       211   3e-55

>Glyma20g25960.1 
          Length = 872

 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/125 (85%), Positives = 111/125 (88%)

Query: 66  KENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTE 125
           KENDRVYLMRV          AFSMVK M MNEVLDASKEKMFASLVPD+SAKALSRYTE
Sbjct: 328 KENDRVYLMRVPSPSSLLPLPAFSMVKSMVMNEVLDASKEKMFASLVPDNSAKALSRYTE 387

Query: 126 MVDEVIRTQAEKLQQASELTRVRLKEMDLPESILALEGNFTLPADLKEDVEAVQISGGPA 185
           MVD+VIRTQAEKLQQASELTRVRLKEM+LP+SILALEGNFTLP  LKEDVEAVQISGGPA
Sbjct: 388 MVDDVIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPA 447

Query: 186 GLEAE 190
           GLEAE
Sbjct: 448 GLEAE 452


>Glyma10g41290.1 
          Length = 872

 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/125 (85%), Positives = 111/125 (88%)

Query: 66  KENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTE 125
           KENDRVYLMRV          AFSMVK M MNE+LDASKEKMFASLVPD+SAKALSRYTE
Sbjct: 327 KENDRVYLMRVPSPSSLPPLPAFSMVKSMVMNEMLDASKEKMFASLVPDNSAKALSRYTE 386

Query: 126 MVDEVIRTQAEKLQQASELTRVRLKEMDLPESILALEGNFTLPADLKEDVEAVQISGGPA 185
           MVD+VIRTQAEKLQQASELTRVRLKEM+LPESILALEGNFTLP  LKEDVEAVQISGGPA
Sbjct: 387 MVDDVIRTQAEKLQQASELTRVRLKEMELPESILALEGNFTLPTSLKEDVEAVQISGGPA 446

Query: 186 GLEAE 190
           GLEAE
Sbjct: 447 GLEAE 451