Jatropha Genome Database

JcCD0062698.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062698.10 + phase: 0 /partial
         (144 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g35090.1                                                        74   6e-14
Glyma14g10100.1                                                        70   9e-13
Glyma14g10090.1                                                        64   8e-11
Glyma17g35100.1                                                        56   1e-08

>Glyma17g35090.1 
          Length = 658

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 85/152 (55%), Gaps = 27/152 (17%)

Query: 10  ERLHDSPSLSMLSSNIDMKSKENT-FFISKGCSQI-----------EFGLVXXXXXXXXX 57
           ER+ D P+L ML   +++K KEN  F I K   QI           EFGLV         
Sbjct: 414 ERMQD-PALPMLPPTLELKPKENNPFMIHK--HQIPSDEYSSRNNNEFGLVTSDSLLNPS 470

Query: 58  XXXXXXXXCRNFGSSQDLTDQETVSQHSVRQFIDDWPKSQSD---KSSVSWPQLD-VQSD 113
                    R+F SSQ     E+  QHS+R FIDD PK QS+   +SS  WP+LD +QSD
Sbjct: 471 EK-------RSFTSSQKNDSSESQQQHSLRHFIDDSPKPQSNHHHRSSSIWPELDNMQSD 523

Query: 114 RTQLSISIPTIAHTDYMSSTSS-PNNERVTLS 144
           RTQLSISIP  +   +MS T+S P+NE++TLS
Sbjct: 524 RTQLSISIPISSSDHFMSFTTSLPSNEKLTLS 555


>Glyma14g10100.1 
          Length = 544

 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 84/152 (55%), Gaps = 27/152 (17%)

Query: 10  ERLHDSPSLSMLSSNIDMKSKENT-FFISK--------GCSQIEFGLVXXXXXXXXXXXX 60
           ERL D P+L ML   +++K KEN  F I K          +  EFGLV            
Sbjct: 309 ERLQD-PALPMLPPTLELKPKENNPFMIHKHHIPADEYSRNSNEFGLVTSDSLLNPTQK- 366

Query: 61  XXXXXCRNFGSSQDLTDQETVSQHSVRQFIDDWPKSQSDKSSVS------WPQLD-VQSD 113
                 R+F SSQ   D E+  QHS+R FIDD PK QS            WP+LD +QSD
Sbjct: 367 ------RSFTSSQK-DDSESQQQHSLRHFIDDSPKPQSHNHHHHHHSSSIWPELDSMQSD 419

Query: 114 RTQLSISIPTIAHTDYMS-STSSPNNERVTLS 144
           RTQLSISI  I+ +D+MS +TSSP+NE++TLS
Sbjct: 420 RTQLSISI-PISSSDFMSFTTSSPSNEKLTLS 450


>Glyma14g10090.1 
          Length = 565

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 24/161 (14%)

Query: 1   MFLDQEK---VGERLHDSPSLSMLSSNIDMKSKE-NTFFISK--------GCSQIEFGLV 48
           MF++ ++     ER+ D  +L ML   +++K KE N F I K          +  EFGLV
Sbjct: 292 MFMNNKENNSTSERMEDCSALPMLPPTLELKPKEKNNFMIHKHQDPYDESSRNNNEFGLV 351

Query: 49  XXXXXXXXXXXXXXXXXCRNFGSSQDLTDQETVSQHSVRQFIDDWPKSQSD---KSSVSW 105
                                 SS    D E+  QHS+R FIDD PK  S    +SS  W
Sbjct: 352 TSDSLLNPTQKRSFDS------SSSQKDDSESQQQHSLRHFIDDSPKPPSHNHHRSSSIW 405

Query: 106 PQLD-VQSDRTQLSISIPTIAHTDYMS-STSSPNNERVTLS 144
           P+LD +QSDRTQLSISI  I+ +D+MS +TSSP+NE++TLS
Sbjct: 406 PELDNIQSDRTQLSISI-PISSSDFMSFTTSSPSNEKLTLS 445


>Glyma17g35100.1 
          Length = 483

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 8/70 (11%)

Query: 83  QHSVRQFIDDWPKSQSDK------SSVSWPQLD-VQSDRTQLSISIPTIAHTDYMS-STS 134
           QHS+R FIDD PK QS        SS  WP+LD +QSDRTQLSISIP  +   +MS +TS
Sbjct: 287 QHSLRHFIDDSPKPQSHHNHNHRSSSSIWPELDNMQSDRTQLSISIPISSSDHFMSFATS 346

Query: 135 SPNNERVTLS 144
           SP+NE++TLS
Sbjct: 347 SPSNEKLTLS 356