Jatropha Genome Database

JcCD0062083.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062083.10 + phase: 0 
         (73 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g46330.1                                                        89   9e-19
Glyma09g39880.1                                                        89   2e-18
Glyma09g17790.1                                                        71   3e-13

>Glyma18g46330.1 
          Length = 88

 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 41/48 (85%), Positives = 42/48 (87%)

Query: 12 FRGKVWSMSGGPYCRPKHWRRNTAIAMASVFLICIPIAMKSAELEVFP 59
          FR KVWSMSGGPYCRPKHW+RNTAIAM  V LICIPIAMKSAELE  P
Sbjct: 17 FRNKVWSMSGGPYCRPKHWKRNTAIAMVGVVLICIPIAMKSAELEQRP 64


>Glyma09g39880.1 
          Length = 90

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/48 (85%), Positives = 42/48 (87%)

Query: 12 FRGKVWSMSGGPYCRPKHWRRNTAIAMASVFLICIPIAMKSAELEVFP 59
          FR KVWSMSGGPYCRPKHW+RNTAIAM  V LICIPIAMKSAELE  P
Sbjct: 17 FRNKVWSMSGGPYCRPKHWKRNTAIAMFGVVLICIPIAMKSAELEQRP 64


>Glyma09g17790.1 
          Length = 61

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 35/45 (77%)

Query: 12 FRGKVWSMSGGPYCRPKHWRRNTAIAMASVFLICIPIAMKSAELE 56
          FR KVW MS GPYCRPKHW+ NT+IA   + LI IPI MKSA+LE
Sbjct: 17 FRNKVWRMSDGPYCRPKHWKHNTSIATVCIVLIYIPIVMKSAKLE 61