Jatropha Genome Database

JcCD0058471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0058471.10 - phase: 1 /partial
         (57 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g02760.1                                                       113   4e-26
Glyma02g17040.1                                                       112   1e-25
Glyma12g10120.1                                                        83   5e-17
Glyma13g38850.1                                                        83   5e-17
Glyma12g31540.1                                                        83   6e-17
Glyma11g18090.1                                                        83   6e-17
Glyma14g17670.1                                                        54   4e-08
Glyma16g17660.1                                                        46   8e-06

>Glyma10g02760.1 
          Length = 936

 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/55 (94%), Positives = 54/55 (98%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSG 55
           KRV+SDAWALDTAQKPY WQ+LNPEGDRPSARMYATASARSDGMFLLCGGRDSSG
Sbjct: 174 KRVVSDAWALDTAQKPYVWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSG 228


>Glyma02g17040.1 
          Length = 881

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/55 (92%), Positives = 53/55 (96%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSG 55
           KRV+SDAWA DTAQKPY WQ+LNPEGDRPSARMYATASARSDGMFLLCGGRDSSG
Sbjct: 174 KRVVSDAWAFDTAQKPYVWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSG 228


>Glyma12g10120.1 
          Length = 1001

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGM 56
           KR L+D WALDTA KPY W++L PEG+ P   MYATASARSDG+ LLCGGRD++ +
Sbjct: 246 KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSV 301


>Glyma13g38850.1 
          Length = 988

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGM 56
           KR L+D WALDTA KPY W++L PEG+ P   MYATASARSDG+ LLCGGRD++ +
Sbjct: 242 KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSV 297


>Glyma12g31540.1 
          Length = 951

 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGM 56
           KR L+D WALDTA KPY W++L PEG+ P   MYATASARSDG+ LLCGGRD++ +
Sbjct: 245 KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSV 300


>Glyma11g18090.1 
          Length = 1010

 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGM 56
           KR L+D WALDTA KPY W++L PEG+ P   MYATASARSDG+ LLCGGRD++ +
Sbjct: 254 KRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSV 309


>Glyma14g17670.1 
          Length = 300

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNPEGDRPSARMYAT 36
           KR L+D WALDTA KPY W +L PEG+ P   MYA+
Sbjct: 127 KRPLADVWALDTAAKPYEWHKLEPEGEGPPPCMYAS 162


>Glyma16g17660.1 
          Length = 209

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/24 (75%), Positives = 20/24 (83%)

Query: 1   KRVLSDAWALDTAQKPYAWQRLNP 24
           KRV+ D WA DTAQKPY WQ+LNP
Sbjct: 146 KRVVFDTWAFDTAQKPYVWQKLNP 169