Jatropha Genome Database

JcCD0056747.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0056747.10 + phase: 0 /pseudo/partial
         (77 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g33080.1                                                        65   2e-11
Glyma19g35780.1                                                        59   1e-09

>Glyma03g33080.1 
          Length = 417

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVER---AXXXXXXXXXXXXXXXXXXXXXXXXEIEWR 57
           FVQV S+SHLKMCVWERG            A                        +IEWR
Sbjct: 336 FVQVLSNSHLKMCVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWR 395

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           EE+NHVYMTG A+VV+YGS+
Sbjct: 396 EEDNHVYMTGSADVVYYGSL 415


>Glyma19g35780.1 
          Length = 359

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVER---AXXXXXXXXXXXXXXXXXXXXXXXXEIEWR 57
           FVQV S+SHLKM VWERG            A                        +IEWR
Sbjct: 278 FVQVLSNSHLKMRVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWR 337

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           EE+NHVYMTG A+VV+YGS+
Sbjct: 338 EEDNHVYMTGSADVVYYGSL 357