Jatropha Genome Database

JcCD0055602.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0055602.10 - phase: 2 /pseudo/partial
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g03630.1                                                        62   1e-10
Glyma02g45120.1                                                        59   1e-09

>Glyma14g03630.1 
          Length = 1431

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 44  TFHLNPKLESAHDNIPTYYVVFSNYNDYDSVSRIFCATRTCLVHCSLDTETESMVKKVLS 103
            F +   + S ++ +P + VVFSN  D   +SRI  AT+ C+  C+L T+T   V  +L+
Sbjct: 918 AFSVEDGIGSLNNQLPGFCVVFSNMEDNSIISRILVATKNCIARCNLATQTGWGVSNILT 977

Query: 104 VLKMEEKLLPK 114
           VLKMEEKL  K
Sbjct: 978 VLKMEEKLSQK 988


>Glyma02g45120.1 
          Length = 1307

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 46  HLNPKLESAHDNIPTYYVVFSNYNDYDSVSRIFCATRTCLVHCSLDTETESMVKKVLSVL 105
           +LN  + S ++ +P + VVFSN  D   +SRI  AT+ C+  C+L ++T   V  +L+ L
Sbjct: 807 YLNDVIGSLNNQLPEFCVVFSNIEDNSIISRILVATKNCIARCNLASQTGWGVANILTAL 866

Query: 106 KMEEKLLPK 114
           KMEEKL  K
Sbjct: 867 KMEEKLSQK 875