Jatropha Genome Database

JcCD0054966.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0054966.10 - phase: 0 
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g05280.1                                                       132   6e-32
Glyma17g34980.1                                                       109   5e-25
Glyma14g10530.1                                                       107   2e-24
Glyma08g21110.1                                                        80   4e-16
Glyma07g01600.1                                                        78   2e-15

>Glyma04g05280.1 
          Length = 714

 Score =  132 bits (333), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 65/71 (91%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFNHAVLPLNPSK 60
          MKRGKDDEK+MGPMFPRLHVNDTEKGGPRAPPRNKMALYEQ SIPSQRFN  VLPLNP+ 
Sbjct: 1  MKRGKDDEKVMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQFSIPSQRFNSGVLPLNPNI 60

Query: 61 ASNLIPAASSS 71
          +SN +P ASSS
Sbjct: 61 SSNTVPPASSS 71


>Glyma17g34980.1 
          Length = 713

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 57/66 (86%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFNHAVLPLNPSK 60
          MKRG ++EK+ GPMFPRLHVND EKGGPRAPPRNKMALYEQ SIPSQ+FN  +LP  P+ 
Sbjct: 1  MKRGNEEEKLGGPMFPRLHVNDAEKGGPRAPPRNKMALYEQFSIPSQKFNPRLLPRKPNS 60

Query: 61 ASNLIP 66
          +SN++P
Sbjct: 61 SSNIVP 66


>Glyma14g10530.1 
          Length = 621

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 58/71 (81%), Gaps = 1/71 (1%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFNHAVLPLNPSK 60
          MKRG ++EK  GPMFPRLHVND EKGGPRAPPRNKMALYEQ SIPSQRFN   LP  P+ 
Sbjct: 1  MKRGNEEEKSAGPMFPRLHVNDAEKGGPRAPPRNKMALYEQFSIPSQRFN-PHLPRKPNS 59

Query: 61 ASNLIPAASSS 71
          +SN++P  +SS
Sbjct: 60 SSNIVPPPTSS 70


>Glyma08g21110.1 
          Length = 620

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 40/49 (81%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRF 49
          MKRG ++ K + PMFPRLHV D EK GP+APPRNKMALYEQ SIPSQ F
Sbjct: 1  MKRGIEEGKEISPMFPRLHVKDAEKRGPKAPPRNKMALYEQFSIPSQNF 49


>Glyma07g01600.1 
          Length = 643

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 40/49 (81%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRF 49
          M  G +++K + PMFPRLHV D E+GGP+APPRNKMALYEQ S+PSQ F
Sbjct: 1  MSGGIEEDKEISPMFPRLHVKDAERGGPKAPPRNKMALYEQFSLPSQNF 49