Jatropha Genome Database

JcCD0054045.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0054045.10 + phase: 1 /TE/partial
         (214 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g22440.2                                                       107   1e-23
Glyma07g30300.1                                                        50   1e-06
Glyma08g06940.1                                                        49   3e-06
Glyma15g06590.1                                                        48   6e-06

>Glyma20g22440.2 
          Length = 544

 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%), Gaps = 1/60 (1%)

Query: 155 LDQPLDISPILPLVDSTDERHAKGAQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAF 214
           +D PL++ P+ PL  S DE++AKGAQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAF
Sbjct: 1   MDTPLEVPPV-PLRSSNDEKYAKGAQQWQNTITGVGQRFSSVHEFRESLRKYAIAHQFAF 59


>Glyma07g30300.1 
          Length = 478

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 4   DGSLSYRGGDAHAIDIDDQMKFNDFKTEVAEMFNCSINNMSLKYFLPG-NRKTLITISND 62
           D  LSY GGD   + +D  +KF  F +++A + + +  +++ KY LPG +   LI+++ND
Sbjct: 57  DNQLSYVGGDTKILAVDRSVKFPAFLSKLAAVCDSAPQDLTFKYQLPGEDLDALISVTND 116

Query: 63  KDLKRML 69
            DL+ M+
Sbjct: 117 DDLEHMM 123


>Glyma08g06940.1 
          Length = 442

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 4   DGSLSYRGGDAHAIDIDDQMKFNDFKTEVAEMFNCSINNMSLKYFLPG-NRKTLITISND 62
           D  LSY GGD   + +D  +KF+ F ++++ + +    +++ KY LPG +   LI+++ND
Sbjct: 57  DNQLSYVGGDTKILAVDRSVKFSAFLSKLSALCDSPPQDLTFKYQLPGEDLDALISVTND 116

Query: 63  KDLKRML 69
            DL+ M+
Sbjct: 117 DDLEHMM 123


>Glyma15g06590.1 
          Length = 446

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 4   DGSLSYRGGDAHAIDIDDQMKFNDFKTEVAEMFNCSINNMSLKYFLPG-NRKTLITISND 62
           D  LSY GGD   + +D  +KF     +++ + +   NN++ KY LPG +   LI+++ND
Sbjct: 54  DNQLSYVGGDTKILAVDRSIKFPAMLAKLSALCDAQDNNITFKYQLPGEDLDALISVTND 113

Query: 63  KDLKRML 69
            DL  M+
Sbjct: 114 DDLDHMM 120