Jatropha Genome Database

JcCD0051435.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0051435.10 - phase: 2 /pseudo/partial
         (218 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g00260.1                                                       372   e-103
Glyma0048s00340.1                                                     369   e-102
Glyma10g12830.1                                                       118   4e-27
Glyma08g38350.1                                                        99   3e-21

>Glyma20g00260.1 
          Length = 1509

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/205 (86%), Positives = 191/205 (93%), Gaps = 1/205 (0%)

Query: 14  PGLKEFDFLI*SSLVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP 73
           P  +  DFLI   +VS+FEKQQSQKEAINALPLYPNEQIMWDES+VPSINYSGEGCLALP
Sbjct: 434 PWSERVDFLI-EVMVSYFEKQQSQKEAINALPLYPNEQIMWDESVVPSINYSGEGCLALP 492

Query: 74  KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGETAFRGWSRMAVP 133
           KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINN+G TAFRGWSRM VP
Sbjct: 493 KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNDGGTAFRGWSRMGVP 552

Query: 134 IKEFKIAEVKQPNIGEVKPSSVTAEVTFSISSYKSQIRSEWNALKEHDVLFLLSIRPSFE 193
           IKEFKI EVKQPNIGEVKPSSVTAEVT+S+SSY++ IRSEW+ALKEHDVLFLLSIRPSFE
Sbjct: 553 IKEFKITEVKQPNIGEVKPSSVTAEVTYSVSSYRAHIRSEWDALKEHDVLFLLSIRPSFE 612

Query: 194 PLSAEEAGKATVPQRLGLQYVRGCE 218
           PLS EE  KA+VPQ+LGLQ+VRGCE
Sbjct: 613 PLSTEEEDKASVPQKLGLQFVRGCE 637


>Glyma0048s00340.1 
          Length = 1522

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/205 (86%), Positives = 191/205 (93%), Gaps = 1/205 (0%)

Query: 14  PGLKEFDFLI*SSLVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP 73
           P  +  DFLI   ++S+FEKQQSQKEAINALPLYPNEQIMWDES+VPSINYSGEGCLALP
Sbjct: 444 PWSERVDFLI-EVMLSYFEKQQSQKEAINALPLYPNEQIMWDESVVPSINYSGEGCLALP 502

Query: 74  KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGETAFRGWSRMAVP 133
           KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINN+G TAFRGWSRM VP
Sbjct: 503 KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNDGGTAFRGWSRMGVP 562

Query: 134 IKEFKIAEVKQPNIGEVKPSSVTAEVTFSISSYKSQIRSEWNALKEHDVLFLLSIRPSFE 193
           IKEFKI EVKQPNIGEVKPSSVTAEVT+S+SSY++ IRSEW+ALKEHDVLFLLSIRP FE
Sbjct: 563 IKEFKITEVKQPNIGEVKPSSVTAEVTYSVSSYRAHIRSEWDALKEHDVLFLLSIRPLFE 622

Query: 194 PLSAEEAGKATVPQRLGLQYVRGCE 218
           PLSAEE  KA+VPQ+LGLQ+VRGCE
Sbjct: 623 PLSAEEEDKASVPQKLGLQFVRGCE 647


>Glyma10g12830.1 
          Length = 347

 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 66/80 (82%), Gaps = 1/80 (1%)

Query: 14  PGLKEFDFLI*SSLVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP 73
           P  +  DFLI   +VS+ EKQQSQKEAINAL LYPNE IMWDES+VP+ NY GEGC ALP
Sbjct: 230 PWSERVDFLI-EVMVSYCEKQQSQKEAINALSLYPNEHIMWDESVVPNTNYFGEGCFALP 288

Query: 74  KLNLQFLTLHDYLLRNFNLF 93
           KLNLQFLT +DYLL++FNLF
Sbjct: 289 KLNLQFLTHNDYLLQDFNLF 308


>Glyma08g38350.1 
          Length = 180

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 69/124 (55%), Gaps = 35/124 (28%)

Query: 50  EQIMWDESLVPSINYSGEGCLALPKLNLQFLTLHDYLLRNF-NLFRLESTYEIREDIQEA 108
           E+IMWDESLVP+INYS E                   +R F  LF +             
Sbjct: 19  EKIMWDESLVPNINYSRE-------------------VRTFRKLFHI------------- 46

Query: 109 VPHLLAYINNEGETAFRGWSRMAVPIKEFKIAEVKQPNIGEVKPSSVTAEVTFSISSYKS 168
              L  Y  ++G T FRGWSRM VPIKEFKI EVKQP IGEVKPSSVTAEVT+S+S   S
Sbjct: 47  --FLHIYHRHDGGTTFRGWSRMDVPIKEFKITEVKQPYIGEVKPSSVTAEVTYSVSKVLS 104

Query: 169 QIRS 172
              S
Sbjct: 105 SYNS 108