Jatropha Genome Database

JcCB1007071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1007071.10 + phase: 0 /partial/short
         (33 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g00940.1                                                        54   4e-08
Glyma02g47710.1                                                        54   4e-08
Glyma15g12220.1                                                        54   4e-08
Glyma09g01370.4                                                        54   4e-08
Glyma09g01370.1                                                        54   4e-08
Glyma09g01370.3                                                        54   4e-08
Glyma15g12220.2                                                        54   5e-08
Glyma09g01370.2                                                        54   5e-08
Glyma17g01180.2                                                        49   2e-06
Glyma17g01180.1                                                        49   2e-06

>Glyma14g00940.1 
          Length = 353

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 3/35 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSY 32
           ELLTRHKSTVA FLSKNYDW   ++NS+LLES SY
Sbjct: 193 ELLTRHKSTVAEFLSKNYDWFFKEYNSQLLESTSY 227


>Glyma02g47710.1 
          Length = 353

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 3/35 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSY 32
           ELLTRHKSTVA FLSKNYDW   ++NS+LLES SY
Sbjct: 193 ELLTRHKSTVAEFLSKNYDWFFKEYNSQLLESTSY 227


>Glyma15g12220.1 
          Length = 334

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FLSKNY+W   ++N+KLLES +YI
Sbjct: 191 ELLTRHKSTVAEFLSKNYEWFFAEYNTKLLESSNYI 226


>Glyma09g01370.4 
          Length = 335

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FLSKNY+W   ++N+KLLES +YI
Sbjct: 192 ELLTRHKSTVAEFLSKNYEWFFAEYNTKLLESSNYI 227


>Glyma09g01370.1 
          Length = 335

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FLSKNY+W   ++N+KLLES +YI
Sbjct: 192 ELLTRHKSTVAEFLSKNYEWFFAEYNTKLLESSNYI 227


>Glyma09g01370.3 
          Length = 334

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FLSKNY+W   ++N+KLLES +YI
Sbjct: 191 ELLTRHKSTVAEFLSKNYEWFFAEYNTKLLESSNYI 226


>Glyma15g12220.2 
          Length = 195

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1  ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
          ELLTRHKSTVA FLSKNY+W   ++N+KLLES +YI
Sbjct: 52 ELLTRHKSTVAEFLSKNYEWFFAEYNTKLLESSNYI 87


>Glyma09g01370.2 
          Length = 275

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FLSKNY+W   ++N+KLLES +YI
Sbjct: 191 ELLTRHKSTVAEFLSKNYEWFFAEYNTKLLESSNYI 226


>Glyma17g01180.2 
          Length = 333

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           EL+TRHKSTVA FLS  Y+W   ++NSKLLES +YI
Sbjct: 184 ELMTRHKSTVADFLSNYYEWFFDEYNSKLLESSNYI 219


>Glyma17g01180.1 
          Length = 335

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           EL+TRHKSTVA FLS  Y+W   ++NSKLLES +YI
Sbjct: 184 ELMTRHKSTVADFLSNYYEWFFDEYNSKLLESSNYI 219