Jatropha Genome Database

JcCB0983611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0983611.10 + phase: 0 /partial/short
         (40 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g39440.1                                                        70   4e-13
Glyma05g19580.1                                                        69   8e-13
Glyma11g05820.1                                                        65   1e-11

>Glyma01g39440.1 
          Length = 558

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 36/40 (90%)

Query: 1   MGIRLDSGDLAYLSGEARKFFRAIEKEFGVPGFGKMSITA 40
           +GIRLDSGDLAYLS E RK F +IEKEFG+PGFGKMSITA
Sbjct: 327 IGIRLDSGDLAYLSCEVRKLFCSIEKEFGLPGFGKMSITA 366


>Glyma05g19580.1 
          Length = 557

 Score = 69.3 bits (168), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/40 (80%), Positives = 35/40 (87%)

Query: 1   MGIRLDSGDLAYLSGEARKFFRAIEKEFGVPGFGKMSITA 40
           +GIRLDSGDLAYLS E R FFR+IEKEFGVP FGK+ ITA
Sbjct: 326 VGIRLDSGDLAYLSCEVRNFFRSIEKEFGVPEFGKLQITA 365


>Glyma11g05820.1 
          Length = 337

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 1   MGIRLDSGDLAYLSGEARKFFRAIEKEFGVPGFGKMSITA 40
           +GIRLDSGDL YLS E RK F +IEKEFG+PGFGKM+IT 
Sbjct: 283 IGIRLDSGDLGYLSCEIRKLFCSIEKEFGLPGFGKMNITT 322