Jatropha Genome Database

JcCB0983031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0983031.10 + phase: 1 /partial
         (152 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g50940.1                                                       193   5e-50
Glyma08g27720.1                                                       181   2e-46
Glyma18g16460.1                                                        59   2e-09

>Glyma18g50940.1 
          Length = 213

 Score =  193 bits (491), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 119/147 (80%)

Query: 6   FQQRFGSRTDAVLNQLREALRGVGLEFNICELFGNSLESHRLIHFAGQQGLDKQHNLAEE 65
           ++++FGS+++ +  ++ E  + VGLE+++  L GN+++SHRLI+FA QQGLDKQH+L EE
Sbjct: 67  YRRKFGSQSERMEARMSEVFKNVGLEYSLSGLTGNTIDSHRLIYFARQQGLDKQHDLVEE 126

Query: 66  LFLGYFTKAKYIGDREFLLECAEKVGVEGAAEFLQDPNNGVKEVYEDLHKYSAGLTGVPN 125
           L +GYFT+ KYIGDR+FLLE A KVG+EGA EFL+DPNNG+KEV E+L  YS  ++GVP 
Sbjct: 127 LNIGYFTQGKYIGDRKFLLESAAKVGIEGAEEFLKDPNNGLKEVEEELKTYSGNISGVPY 186

Query: 126 YVINGKKKLNGAQPPEVFLRAFEAAAN 152
           YVING  KL+G QPPEVFLRAF+ A N
Sbjct: 187 YVINGNHKLSGGQPPEVFLRAFQVATN 213


>Glyma08g27720.1 
          Length = 213

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 114/148 (77%)

Query: 5   LFQQRFGSRTDAVLNQLREALRGVGLEFNICELFGNSLESHRLIHFAGQQGLDKQHNLAE 64
            ++ +FGS+++ +  ++ E  + VGLE+++  L GN+++SHRLI+FA QQGLDKQH+L E
Sbjct: 66  FYRSKFGSQSERMEARMSEVFKNVGLEYSLSGLTGNTIDSHRLIYFARQQGLDKQHDLVE 125

Query: 65  ELFLGYFTKAKYIGDREFLLECAEKVGVEGAAEFLQDPNNGVKEVYEDLHKYSAGLTGVP 124
           EL +GYFT+ KYIGD +FLLE A KVG+EGA EFL+DPNNG+KEV E+L   S  ++GVP
Sbjct: 126 ELNIGYFTQGKYIGDHKFLLESAAKVGIEGAEEFLKDPNNGLKEVEEELKNNSGNISGVP 185

Query: 125 NYVINGKKKLNGAQPPEVFLRAFEAAAN 152
            YVING  KL+G Q PEVFLRAF+ A  
Sbjct: 186 YYVINGTHKLSGGQAPEVFLRAFQVATT 213


>Glyma18g16460.1 
          Length = 40

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 39 GNSLESHRLIHFAGQQGLDKQHNLAEELFLGYFTKAKYI 77
          GN+++SHRL++F  QQGLDKQH+L EEL +GY T+ KYI
Sbjct: 1  GNTIDSHRLVYFDRQQGLDKQHDLVEELNIGYLTQGKYI 39