Jatropha Genome Database

JcCB0914631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0914631.10 + phase: 0 /partial
         (53 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g34940.1                                                        98   2e-21
Glyma12g20220.1                                                        96   7e-21
Glyma12g23470.1                                                        64   5e-11

>Glyma06g34940.1 
          Length = 439

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/52 (80%), Positives = 45/52 (86%)

Query: 2   QATIARGNDAGPYKITDTMAFMFESCLIPRICSWAVESPLLDADYYQCWLGL 53
           +ATIARGND GP KITDTMAFMFES LIPRI  WA+ESP LD DYYQCW+GL
Sbjct: 368 EATIARGNDGGPCKITDTMAFMFESSLIPRISQWALESPFLDQDYYQCWIGL 419


>Glyma12g20220.1 
          Length = 455

 Score = 96.3 bits (238), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/52 (80%), Positives = 44/52 (84%)

Query: 2   QATIARGNDAGPYKITDTMAFMFESCLIPRICSWAVESPLLDADYYQCWLGL 53
           +ATIARGND GP KITDTMAFMFES LIPRI  WA ESP LD DYYQCW+GL
Sbjct: 384 EATIARGNDVGPCKITDTMAFMFESSLIPRISQWASESPFLDQDYYQCWIGL 435


>Glyma12g23470.1 
          Length = 119

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 1   LQATIARGNDAGPYKITDTMAFMFESCLIPRICSWAVESPLLDADYYQ 48
            +ATIA  ND GP KITDTMAFMFES LIP++  WA+ES     DYYQ
Sbjct: 73  FRATIAGENDVGPSKITDTMAFMFESTLIPQLSQWALESSFYQ-DYYQ 119