Jatropha Genome Database

JcCB0907471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0907471.10 - phase: 2 /partial
         (85 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g36020.1                                                        90   6e-19
Glyma10g31560.1                                                        86   7e-18
Glyma03g27790.1                                                        62   9e-11
Glyma19g30650.1                                                        60   7e-10
Glyma15g23660.1                                                        50   7e-07

>Glyma20g36020.1 
          Length = 937

 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 60/85 (70%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDDLE 60
           W++ W+ YVG     L VD QS D  + ++    +ADRPGPI+NS+I+  G+  ++++L+
Sbjct: 52  WFSRWQSYVGPCVGMLSVDKQSSDGHNANMTHPKIADRPGPIDNSDIISKGNSCDNNNLD 111

Query: 61  LARTLLEGRDYVLVPQKVWEKLVQW 85
           + R L EG DYVLVP+KVWE+L++W
Sbjct: 112 IHRMLEEGTDYVLVPEKVWERLLEW 136


>Glyma10g31560.1 
          Length = 926

 Score = 86.3 bits (212), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 59/85 (69%), Gaps = 2/85 (2%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDDLE 60
           W++ W+ YVG     L +D QS D+    +    +ADRPGPI+NS+I+  G+  +S++L+
Sbjct: 52  WFSRWQSYVGPCVGMLSIDKQSSDNH--LITHPKIADRPGPIDNSDIISKGNNCDSNNLD 109

Query: 61  LARTLLEGRDYVLVPQKVWEKLVQW 85
           + R L EG DYVLVP+KVWE+L++W
Sbjct: 110 IHRMLEEGTDYVLVPEKVWERLLEW 134


>Glyma03g27790.1 
          Length = 938

 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDD-L 59
           W+  W +YV Q   +   D  S  S+ F +A S    RP  I+NS+++++    +S   +
Sbjct: 47  WWQHWIEYVNQDQTNTSYDASSL-SEQFDLANSSALKRPAGIDNSDLIDDAVLEDSGTGI 105

Query: 60  ELARTLLEGRDYVLVPQKVWEKLVQW 85
           E+  TLLEGRDYVL+PQ+VW +L +W
Sbjct: 106 EIHDTLLEGRDYVLLPQEVWNQLFRW 131


>Glyma19g30650.1 
          Length = 904

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESD-DL 59
           W+  W +YV Q   +   D  S  S+   +A S +  RP  I+NS+++++    ++   +
Sbjct: 47  WWQHWIEYVNQEQTNTSYDASSL-SEHCDLANSSVLKRPAGIDNSDLIDDAVSEDTGMGI 105

Query: 60  ELARTLLEGRDYVLVPQKVWEKLVQW 85
           E+  TLLEGRDYVL+PQ+VW +L +W
Sbjct: 106 EIHDTLLEGRDYVLLPQEVWNQLFRW 131


>Glyma15g23660.1 
          Length = 357

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 25 SQDFHVAPSGMADRPGPINNSEIVENGSGGE-SDDLELARTLLEGRDYVLVPQKVWEKLV 83
          S+   +A S    RP  I+NS+++++    +    +E+  TLLEG DYVL+PQ+VW++L 
Sbjct: 24 SEHCDLANSSALKRPNGIDNSDLIDDAMSEDFGTGIEIHDTLLEGCDYVLLPQEVWKQLF 83

Query: 84 QW 85
          +W
Sbjct: 84 RW 85