Jatropha Genome Database

JcCB0902911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0902911.10 - phase: 1 /partial
         (100 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g06780.1                                                       134   1e-32
Glyma02g42130.1                                                       134   2e-32
Glyma20g28590.1                                                       100   5e-22
Glyma10g39300.1                                                        83   6e-17

>Glyma14g06780.1 
          Length = 532

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 81/97 (83%), Gaps = 10/97 (10%)

Query: 2   QVKWLLKLSQIAEVIEVPNFSEEAQSFLQGLIDGFSLDDALEVKNIEKVTNHDVKAVEYF 61
           ++KWLL+LS I E++EVP+FS+ A+SFLQGLID FS++DA EVKNIE+VTNHDVKAVEYF
Sbjct: 105 EIKWLLQLSVIPEIVEVPSFSDGAKSFLQGLIDDFSVEDASEVKNIERVTNHDVKAVEYF 164

Query: 62  LKKKCQSHPEIAK----------SEDINNLAHALMLK 88
           LK+KCQS+ E+AK          SEDINNLAHALMLK
Sbjct: 165 LKQKCQSNAEVAKVLEFFHFACTSEDINNLAHALMLK 201


>Glyma02g42130.1 
          Length = 537

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 81/97 (83%), Gaps = 10/97 (10%)

Query: 2   QVKWLLKLSQIAEVIEVPNFSEEAQSFLQGLIDGFSLDDALEVKNIEKVTNHDVKAVEYF 61
           ++KWLL+LS I E++EVP+FS+ A+SFL+GLID FS++DALEVKNIE+VTNHDVKAVEYF
Sbjct: 110 EIKWLLQLSVIPEIVEVPSFSDGAKSFLEGLIDNFSVEDALEVKNIERVTNHDVKAVEYF 169

Query: 62  LKKKCQSHPEIAK----------SEDINNLAHALMLK 88
           LK KCQS+ E+AK          SEDINNLAHALML+
Sbjct: 170 LKHKCQSNAEVAKVVEFFHFACTSEDINNLAHALMLR 206


>Glyma20g28590.1 
          Length = 413

 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/71 (73%), Positives = 57/71 (80%), Gaps = 10/71 (14%)

Query: 28  FLQGLIDGFSLDDALEVKNIEKVTNHDVKAVEYFLKKKCQSHPEIAK----------SED 77
           FLQGLID FS+DDALEVKNIE+VTN DVKAVEYFLK+KCQS+ E+ K          SED
Sbjct: 99  FLQGLIDDFSVDDALEVKNIERVTNDDVKAVEYFLKQKCQSNAEVVKVLEFFHFACTSED 158

Query: 78  INNLAHALMLK 88
           INNLAHALMLK
Sbjct: 159 INNLAHALMLK 169


>Glyma10g39300.1 
          Length = 302

 Score = 83.2 bits (204), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/87 (55%), Positives = 57/87 (65%), Gaps = 21/87 (24%)

Query: 2   QVKWLLKLSQIAEVIEVPNFSEEAQSFLQGLIDGFSLDDALEVKNIEKVTNHDVKAVEYF 61
           ++KWLL+LSQI E++EVP+FSE A  FLQGLID FS+DDALEV             +E+F
Sbjct: 55  KIKWLLQLSQIPEIVEVPSFSEGATIFLQGLIDDFSVDDALEV-------------LEFF 101

Query: 62  LKKKCQSHPEIAKSEDINNLAHALMLK 88
               C        SEDINNLAHALMLK
Sbjct: 102 -HFAC-------TSEDINNLAHALMLK 120